Pseudodesulfovibrio sediminis: PSDVSF_30260
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Entry
PSDVSF_30260 CDS
T08380
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02481
two-component system, NtrC family, response regulator
Organism
psef
Pseudodesulfovibrio sediminis
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
psef02022
]
PSDVSF_30260
Two-component system [BR:
psef02022
]
NtrC family
Unclassified
PSDVSF_30260
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
Mg_chelatase
AAA_2
HTH_50
AAA
AAA_7
AAA_16
HTH_30
HTH_7
cREC_REC
APS_kinase
VpsR
HTH_17
HTH_23
VpsT-like_REC
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
BCS89784
LinkDB
All DBs
Position
complement(3210937..3212286)
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AA seq
449 aa
AA seq
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MPSPYNVLVVDDERSIRRLLKRELESSERILHTAEDAKRARQLLSKTRYDVIILDIRLPD
ADGMDLYTEFKSTQQDLEFVLITGHGDIDSAVEAMRLGVFDYITKPFKLDRMELVLDRAY
QRVCLHRENRGLRHTQENTTQKTHLIGRSDPIKGINFLIEKLTPSEVPVLITGESGAGKD
VVAHAIHSRSKRSAHPLIIKNCAMLQREMVRSELFGHKKGSFTGASEGHDGLISVAHKGT
LFLDEIGDLPDDVQASLLRLLETKTYRRMGDNEERLADVRFLFATNRDLGKAVEKGEFNE
ALYHRINVFNIHIPRLSKRKEDIPLLVEHFLNLLSPGQEPAVMPQKTLHHLLNYDWPGNV
RELRNVLERALILSDTNVITDNTLPPEVVGTCNDPEPTSPPMSLESVEREHIIRVLSIYT
GNRQKAADALGIGRKTLYRKIQKYGIESV
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaccctataatgtccttgtcgtggatgatgaacgatccatccgcagactcctg
aaaagggagctcgaatccagcgaacgcatcctgcacaccgctgaagacgccaagcgagca
cgccagcttctgtccaagacgcggtatgacgtcatcattctggatatccgcctgccagac
gcagacggcatggatttatatactgagttcaaatcgacccagcaggatctggagttcgtg
ctcatcacgggtcacggagacatagacagcgctgtggaggccatgcgtctgggcgtcttt
gattacatcaccaagcccttcaagctcgaccgcatggagctggttctggatcgcgcctac
caacgggtatgtctgcaccgtgaaaaccgcgggctgcgacacactcaggaaaacaccacc
cagaaaacccacctcatcggtcgttccgaccccatcaagggcatcaattttcttattgag
aagctgaccccgtcggaagtgccggtcctcatcaccggcgaaagcggcgcaggcaaggac
gtggtggcccacgccatccacagccgttccaagcgctccgctcaccccctgatcatcaag
aactgcgccatgctgcaacgggagatggtccggtccgagcttttcggtcacaagaaaggc
tcgttcaccggcgcatcagaaggccacgacggcctcatctccgttgcgcacaagggtacc
ctctttctggatgaaataggcgatctgccggacgacgtacaggcctccctgctccgcctg
ttggaaacaaagacctatcgccgtatgggcgacaacgaagaacgcctggctgacgtccgc
ttcctgtttgccaccaaccgcgatctgggcaaggccgtggaaaagggcgagttcaacgag
gcgctgtaccatcgcatcaatgtcttcaacatccacattccgcgactctcaaagcggaaa
gaggacatccccctgctggtcgagcacttcctgaatctgctgagcccgggccaggaaccg
gctgtcatgccgcaaaagaccttgcaccacctgctcaattacgactggccgggcaatgtc
cgggagttgcgcaatgttctggagcgcgccctgattctgtctgacaccaacgtgatcacg
gacaacacccttccccccgaggtcgtcggaacctgcaacgaccctgaaccgacaagtcct
cccatgtctctcgaaagcgttgaacgcgagcacatcattcgtgtattatctatatatact
ggcaaccggcaaaaggctgccgacgctcttgggatcggtagaaaaacactctaccgcaag
attcaaaaatacgggatcgaaagcgtatag
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