Paraflavitalea soli: D3H65_02285
Help
Entry
D3H65_02285 CDS
T05640
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pseg
Paraflavitalea soli
Pathway
pseg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pseg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D3H65_02285 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseg03400
]
D3H65_02285 (ligD)
Enzymes [BR:
pseg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D3H65_02285 (ligD)
DNA repair and recombination proteins [BR:
pseg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D3H65_02285 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AXY72868
UniProt:
A0A3B7MEU9
LinkDB
All DBs
Position
complement(609586..612273)
Genome browser
AA seq
895 aa
AA seq
DB search
MALTTYRKKRSFNKTPEPTGGKSSGKALRFVIQKHDASRLHYDFRLEMDGVLKSWAVPKG
PSTNPEDKRLAMMVEDHPYDYRSFEGIIPEGNYGAGTVIVWDEGTYEPLEPSGDKKKDEK
ALLKQLKAGSLKFSLSGHKLQGEFALVRLKNAENNAWLLIKHRDQYAKATDVTRKVRSVV
SDKTLEEVAKTSHNIYGQSKAAAPKKASKAATTTPKKAVKKTAPRKAARKKKDVAALEEA
PKKAFPKNIQPMLGTLVSEPFDQPGWLYEIKWDGYRALALCNKGKVELLSRNQKSFNEKF
YPVYKAVKDWQLDAVIDGEICVVSDKGISHFGSLQNWRSEADGELVYYVFDILWLDGHDL
TGLPLVKRRDLLRPLVPSSGIIRYSEAFESSATEFLAAASKMGMEGIMAKKADSVYLPGE
RTRDWLKLKANKRHEVVIGGFTNNEDSPKLFSALLVGLYDGKRLNYTGKIGTGFNDKMQR
EMMKQFKPLITTKCPFTELPDVNKPSRFRPNPPHATVTWLKPKLVGEVSYAEMTSDGVMR
HPSFEGMREDKKASAVVAETAVEVKEVTKRGRKDPATKLLKQGGKQERKTLLNPSEATQV
RAINGHELSFTNLNKIFWPKEKYTKRDMLNYYYQVAPYILPYLVNRPQSLNRYPNGINGK
SFYQKDITGKAPAWIKQFPYHTSEGEDKNFMVPTNEAGLLWMANLGAIEMNPWNSTIDKP
EHPDWCCLDLDPDKGNTFEQVIQTARVVKQVLDQLGIEGYPKTSGSTGIHIYIPLGAKYT
YDECQLFGKLIATHVREQLPQFTSIERLTRNRKGKLYIDYLQNRPKATLAAAYSLRPKPG
ATVSMPLHWDEVKKGLQLQHFTLANAMERIKREGDLFKPVLGKGVNIARVLKQLQ
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggctttaactacctaccgcaaaaaacgctcctttaacaaaacaccggaacctaccggt
ggcaagtcatccggcaaagctttacgatttgtaatacaaaagcatgatgcatcccgcctg
cattatgatttccgcctggagatggacggtgtattgaaaagttgggcggtccccaagggg
ccttccaccaatcccgaagacaaaagactggccatgatggtagaagaccatccctatgat
taccgcagttttgagggcattatccccgaaggtaattatggggccggcacggtgatcgta
tgggatgaaggcacctatgaacccctcgaacccagcggcgataaaaagaaagatgaaaaa
gcgttgctcaaacaactcaaagcaggctcgctcaaattcagtttatcaggccataaacta
cagggtgaatttgcgctcgtacgattaaaaaatgcagagaacaacgcctggctactcatc
aaacaccgggatcagtacgccaaagcaacggatgtaaccaggaaagtacggtctgttgta
tctgataaaacccttgaagaagtggcaaagaccagtcataatatatacggtcaatcaaag
gctgccgctcctaaaaaagcttccaaagccgctaccaccacaccgaaaaaagcagtaaaa
aagacagcaccgcgcaaggcggcacgaaaaaaaaaagacgtagcagcactggaggaagca
cctaaaaaagcatttcccaaaaacattcaacccatgctgggcaccctcgtcagcgaacct
tttgatcaaccaggctggttgtatgagatcaaatgggatggctaccgggccctggccctt
tgtaataaaggcaaggtggaactactctcccgcaaccagaaatcattcaatgaaaaattc
tatcctgtatacaaggcggtaaaggactggcagctcgatgcagtcatagacggagagatc
tgcgtggtcagtgacaaaggcatttcccattttgggtcgctgcagaactggcgaagtgaa
gctgatggcgaactggtatattatgtatttgacatcctttggctggatggccacgacctc
accggactgccactggtaaagcgacgtgatctgctacgaccattggtaccatcttcgggc
attatccgctacagcgaagccttcgaaagctcggccacagagttcctggcagcagcttct
aaaatgggaatggaaggcataatggccaagaaagccgatagtgtttacctgccgggagaa
cgtacccgcgactggttaaagctgaaagccaataaaagacatgaagtagtgatcggcgga
ttcaccaacaatgaggattcacccaaactgttcagtgcattgctggtagggctgtatgac
gggaaaagattgaactataccggcaaaataggtactggtttcaatgacaagatgcaacgg
gaaatgatgaaacagtttaagccccttattaccaccaaatgcccttttactgaactgcca
gacgtcaacaagccttcccgcttccggcccaatcctcctcatgccaccgttacctggcta
aaacccaaactggtgggagaagtgagttatgctgaaatgaccagcgacggagtgatgcgc
catcccagttttgaaggtatgcgggaagacaaaaaagccagcgctgtagtagctgaaact
gctgtggaggtaaaggaagtgactaaaaggggcaggaaagatccggcaaccaaactattg
aagcagggaggcaaacaggaaaggaagaccctgctgaacccttctgaagcaacgcaggtg
agggctatcaatggccatgaactttcctttaccaacctcaataagatattctggccaaag
gaaaaatataccaagcgagatatgctcaactactattaccaggtggcgccctatatactc
ccctacctggtaaaccggccccaatcattgaaccgataccccaatgggatcaatggaaaa
agcttttaccagaaggatataacaggcaaagcgcccgcatggatcaagcaatttccctat
cataccagtgagggggaagacaagaatttcatggtacctaccaatgaagcaggcctgttg
tggatggctaacctgggggccattgagatgaacccctggaacagcaccattgacaaaccg
gagcaccctgactggtgctgcctcgacctggaccccgacaaaggcaatacttttgaacag
gtgatacaaaccgcccgggtggtaaaacaggtgctggaccaactgggcattgaggggtac
cccaagacatccggctctaccggtattcatatctatatcccattgggcgcaaagtatacg
tatgacgaatgccagctatttggcaagctcatcgccacgcatgtacgggagcaattacca
cagtttaccagcatcgaaagactcacccgcaacaggaagggaaaactctatatcgactac
ctgcaaaatcgccccaaagccacgctggcagcggcttactcactgcgacccaaacccggc
gccacggtatcaatgcccctccattgggacgaagtaaagaagggtttacagctacaacat
ttcacacttgccaatgcaatggaacggatcaaaagagagggcgatctgttcaaaccagtg
ttgggtaaaggtgtcaatattgccagggtattgaagcaattacaatag
DBGET
integrated database retrieval system