Paraflavitalea soli: D3H65_26440
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Entry
D3H65_26440 CDS
T05640
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pseg
Paraflavitalea soli
Pathway
pseg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pseg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3H65_26440 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseg03400
]
D3H65_26440 (mfd)
Enzymes [BR:
pseg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3H65_26440 (mfd)
DNA repair and recombination proteins [BR:
pseg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D3H65_26440 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
P_C
Ribosomal_60s
Motif
Other DBs
NCBI-ProteinID:
AXY77304
UniProt:
A0A3B7MRZ4
LinkDB
All DBs
Position
complement(6865185..6868685)
Genome browser
AA seq
1166 aa
AA seq
DB search
MNLQSLLDTYKNNPRLFQLADRLSFAKPQHIYCSHLRGSASAFVISTIFQHPSCSQQNHV
VICEDAEAAAYLHNSLENLTSALNVYFFPSSFKNRKNFRLLNSSHVMLRTEALTRFAAQA
AGKGSRTGLLVTYPEALYEKVVLPDSLSGNIIYLKSGDSINVDGLMEQMVGYGFQRTDFV
YEPGQFALRGGILDIYSFGNEKPYRVELFGNDVDSIRIFDPETQLSERKLLSVTIIPNVE
TQFDSDEKTSLFDFLPDNTIVWMQDWALTKEKLITQEEDLGLFLNLQQDAAAAAAAASAA
ATAKGRDARNKFQDDEEETRLVKVNIKTDDFVPADMLELQLQKRHLIEFGHESTFPFFNG
DEAFTILFNTKDQPAFNRQFDMLIRDLKQWAAKGFGLYLFAENPRQLERLNSIFEDLKAE
IQFTPVPTSIHQGFIEEDLKVVCYTDHQIFQRYHKYKVKQAYNKNKALTLRTLRELQPGD
YVTHIDHGVGTYSGLQKIDVNGKLQEAVRILYKDSDILYVNINSLHKISKYTGKEGTIPK
VNKLGSDAWNKLKEKTKVKVKEIAFDLIKLYAQRKAQQGFQHTPDNYMQTELEASFIYED
TPDQSKASADVKKDMEQPSPMDRLVCGDVGFGKTEIAVRAAFKTCCDGKQAAVLVPTTIL
AFQHYKTFKERLKDFPVTVDYINRFKSSKEKKETLKRLEEGKVDIIIGTHGILGKEVKFK
DLGLLVIDEEQKFGVAHKEKIKTLRTNVDCLTLTATPIPRTLQFSLMGARDLSIINTPPP
NRQPIQTEVMVFNEDAIRDAIYFETERGGQVFFIHNRVLGLSEMAGLIQGLCPDLSIGTA
HGQMEGHDLEERILDFIDKKYDVLVCTNIVESGVDIANVNTIIINNAHQFGLSDLHQLRG
RVGRSNKKAFCYLMAPPVSTLPDDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNMLGG
EQSGFMAEIGFEMYQKILDEAIKELKRTEFRALFKEEISKQEDYVQDCTIDTDLEILIPD
TYVESITERLSLYTRLDNCEDEAALQEFAQELQDRFGPIPKQVEDLFDTVRSRKLAVELG
FEKMLLRDETLKCFFINKADSPYFESDTFREILTYIQKYTNNAKLKQTGKLFLLIADKIK
DMQTLTQFLSRMRNFVKSETEKPVNQ
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgcagtcgttgttggatacttacaagaataacccccgcctttttcaactggcg
gacaggctctcttttgccaaaccacaacatatttactgcagccacctccgcggaagcgca
tcagcttttgttatcagcaccattttccagcacccttcctgcagtcagcaaaatcatgta
gtgatctgcgaagatgccgaagccgctgcctatctccacaattcactggagaaccttacc
agcgccctcaatgtctatttcttcccctcttcgtttaagaacaggaagaacttccggctg
ctcaactcctcccatgtcatgttgcgcacagaagccctcacccgcttcgccgcacaggcc
gcaggaaaaggcagccgtacaggtttgctggtcacctaccccgaagcattgtatgaaaaa
gtagtattgcccgattcactctccggcaatatcatctacctcaaatcaggcgactccatc
aacgtggatggcctgatggaacaaatggtaggctacggtttccaacgcaccgattttgtg
tacgaacccggtcagtttgcactgcggggcggcatcctcgatatctattcttttggcaat
gaaaagccctaccgcgtagagctcttcggtaatgatgtagactctatccgcatctttgat
ccggaaacacagttaagcgagcggaagctactttccgtaaccattattcccaacgtggag
acccaattcgacagcgatgagaaaacatccctgttcgacttcctgcccgataataccatc
gtatggatgcaggattgggcactcaccaaagaaaagctcattacccaggaagaagacctt
ggcctcttcctcaacctccagcaggatgccgcagcagccgcagccgctgcaagcgcagca
gccaccgccaagggcagggacgccaggaataagtttcaggatgacgaagaagaaacaagg
ttagtaaaagtcaatattaagaccgacgactttgtgccagccgatatgctggaattacaa
ttacaaaagcgtcacctcatagagtttggtcacgagtctaccttccccttctttaacggg
gacgaggctttcaccatacttttcaataccaaagatcagccggccttcaaccgccagttt
gatatgctgatcagggacctcaaacaatgggccgccaaaggttttggtctttatcttttt
gcagagaacccacggcaactggaaaggctcaacagtattttcgaagacctgaaggccgag
atccagttcacccccgtcccaacctccattcaccagggttttatagaagaagaccttaaa
gtagtttgctataccgatcaccagatatttcagcggtaccacaagtacaaggtaaagcag
gcctacaataaaaataaagccctcaccttacgtaccctccgggaattacaaccaggagac
tatgttacccacatagaccatggtgtgggtacctacagcgggttacagaaaatagatgtg
aatggcaagctccaggaagccgtgcgcattctctataaggacagcgatatcctgtatgtg
aacatcaattcactgcacaaaatatccaagtacaccggcaaggaaggcaccatacccaag
gtaaacaaactgggcagcgatgcctggaataaactaaaggaaaagaccaaggtaaaggtc
aaggagatcgccttcgacctcatcaagttatacgcgcagcgcaaagcgcagcagggcttt
cagcatacccccgacaattacatgcaaaccgagctggaagcctccttcatttacgaggat
acacccgatcaaagcaaggcttcagccgatgtgaagaaggatatggaacagccctctccc
atggacaggctggtatgtggagatgtaggctttggcaaaacagagatcgccgtgcgggca
gcctttaagacttgctgcgatggtaagcaggctgctgtattggtacctactaccattctg
gctttccagcattacaaaacattcaaagagcgcttaaaggatttccctgtaaccgttgac
tacatcaaccggttcaaatcgtccaaagagaagaaggaaacactcaaacgcctggaagaa
ggtaaggtcgacatcatcattggtacacatggcatcctgggcaaggaagtcaagttcaag
gaccttggcttgctggttattgatgaagagcagaagtttggcgtggcccacaaggaaaag
atcaagaccctgcgcaccaatgtagactgccttaccctcactgccacacctattccgcgc
accttgcagttcagcttaatgggcgcaagagacctgagcattatcaatactccgccaccc
aaccgccagcccatccaaacagaagtgatggtattcaacgaagatgctatccgcgatgcc
atctactttgagaccgaacgtggcggccaggtattctttatccataaccgggtgctcggc
ctcagcgaaatggccggtctcatccagggattatgtccagatctcagcattggtaccgcc
catggacaaatggaaggccacgacctcgaagagcgcatcctggatttcattgataagaaa
tatgatgtgcttgtgtgtaccaatatcgtggagagtggtgtggacattgccaacgttaat
accatcatcatcaacaatgcccaccagtttggcctgagtgatcttcaccagttgcgtggc
cgtgtgggcagaagcaataaaaaagccttctgttacctgatggccccgcccgtcagtacc
ctgcccgatgattcgaggaaacgcttacaaaccctggagcaacacagtgaactgggcagc
ggtttccagatagccatgcgcgacctggatatccggggcgcaggaaacatgctgggcggt
gagcaaagcgggttcatggccgagattggctttgagatgtatcagaagatcctggatgaa
gccatcaaagaattgaagcgtacagagttcagggccctcttcaaagaagagatatccaag
caggaagattatgtgcaggattgtaccatcgataccgacctcgagatcctgatccccgat
acttatgtagaaagcattacagaaagactgtccttatacacccgcctcgacaattgcgaa
gatgaggcagccctgcaggagtttgcacaggaactgcaggaccgtttcggtcctattccc
aagcaggtagaggacctgtttgataccgtgcgtagtcgtaaactggccgtagaactgggc
tttgaaaagatgctgctgcgcgatgaaaccctcaaatgcttcttcatcaacaaagcagat
tcaccctactttgaatccgataccttccgcgagatacttacctatatacagaagtatacc
aacaatgcgaagctgaagcaaaccggcaagctattcctcctgattgccgataaaataaag
gatatgcaaaccttaacgcaattcctgagcaggatgcgcaacttcgtgaagtctgaaacc
gaaaaaccggttaaccaataa
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