KEGG   Pseudactinotalea sp. HY158: GCE65_08880
Entry
GCE65_08880       CDS       T06271                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psei  Pseudactinotalea sp. HY158
Pathway
psei03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GCE65_08880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psei03400]
    GCE65_08880
Enzymes [BR:psei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GCE65_08880
DNA repair and recombination proteins [BR:psei03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GCE65_08880
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QGH69619
UniProt: A0A5Q2W0L6
LinkDB
Position
2024814..2027342
AA seq 842 aa
MPAAATTAVAGRSLRLTNLDKVLYPATGTTKGDVIDYYVAIAPALIGLAAGRPVTRKRWV
EGVGTAAEPAPGFFRKDLEPDAPVWVPRVTYRHKERTNTYPLATEAAVLAWFGQLAALEL
HVPQWRVDTGGRRSNPDRLVLDLDPGPGAGLAECAEVARLCREVLEGMGLTAVPVTSGST
GIHLYAGLDGSTTSEQASAVAKELARAIEADRPDLAVSTMRKELRGGKVLIDWSQNNAAK
TTICPYSLRGRPRPTVAAPRTWEEIDDPRLAQLQYRQVLERVAAGIDPMSPFGLRSSVDD
DRLATYRSMRDPARTPEPVPADPPQLRTGEKIFVIQEHHASRPHWDVRLERDGVLASWAV
PKGPPLETRSNRLAVRVEDHPLSYATFSGTIPTGEYGAGTVQIWDSGTYTAEKWREGEEV
IVVLHPAASDSPGSPDSPGSSDGTGGLGGLDRRYALIHTGGKPEDEQNWLLHLMKEQPER
TRAGGDDGAAQRLMREAGTASSVGSPQADTTGSAHPLTRSTLPAPMLATAGSAADLDREA
GWRMEMKWDGVRAIAFTSASGEVTLLSRNGTDLTPAYPELAELADLAPPRSVLDGEIVAL
NGHGAPDFGVLQRRMNLSTPARVEAERERTPVHFMVFDALQLRAADGEPRRLLRAPYAER
RAELEAQVGEGEFVHVPPVHGDDLEAAMRTSRGLRLEGVLAKRDDSHYTSGRRTRDWIKI
KHERHQEVVVIGWRPRAENAVELASLLLAVPEDGRLRYAGRVGTGLRQADRADIPRALHS
LERKTPPAGDIPAAIARDARWVRPTRVGEVRHAGPTRAGVLRQPVWRGWRPEVSAEEVRW
EA
NT seq 2529 nt   +upstreamnt  +downstreamnt
atgcccgccgccgccacgaccgccgtcgcgggccggtccctgcgcctgacgaacctcgac
aaggtgctataccccgccacgggcaccaccaagggcgacgtgatcgactactacgtggcg
atcgccccggcgctcatcgggctcgcggccgggcgaccggtcacccggaagcgctgggtc
gagggcgtgggcacggcggccgagcccgcacccgggttcttccgcaaggatctcgagccg
gacgcccccgtgtgggtgccccgggtgacctaccgtcacaaggagcgcacgaacacctac
ccgctcgcgaccgaggcggcggtgctcgcctggttcggccagctcgccgccctcgagctg
cacgtgccgcagtggcgcgtcgatacgggcggccggcgctccaaccccgaccggctcgtg
ctcgacctcgatcccgggcccggtgccgggctcgccgaatgcgccgaggtcgcgcggctg
tgccgggaggtcctcgagggcatgggcctgaccgccgttccggtgacgtccggctcgacg
ggcatccacctgtacgccgggctcgacggctccaccacgtccgagcaggcctcggcggtc
gcgaaggagctcgcccgggcgatcgaggccgaccgtccggatctggcggtctcgaccatg
cgcaaggagctgcgcggcggcaaggtgctcatcgactggtcgcagaacaacgcggcgaag
accaccatctgcccgtactccctgcggggccggccccggccgaccgtcgccgcgccgcgc
acgtgggaggagatcgacgacccgaggctcgcgcagctgcagtaccggcaggtgctcgag
cgggtggccgccggcatcgacccgatgtcgccgttcggcctgcgctcgagcgtggacgac
gaccggctcgccacgtaccgttcgatgcgcgatccggccaggacgcccgagccggtgccg
gccgacccgccgcagttgcgcaccggggagaagatcttcgtgatccaggagcaccacgcg
tcccggccgcactgggatgtccggctcgaacgcgacggcgtgctcgccagttgggccgtg
cccaagggcccgccgctggagacgcgctcgaaccggctcgcggtccgcgtcgaggaccac
ccgctgtcctatgccacgttctcgggcacgatccccacgggcgagtacggcgccggcacc
gtgcagatctgggattcgggcacctacaccgcagagaagtggcgcgagggcgaggaggtg
atcgtcgtactccaccccgccgcctccgactcccccggctcgcccgactcgcccggctcc
tccgacggcaccggcggcctcggcggtctcgatcgccggtacgccctcatccacaccggc
ggaaagcccgaggacgagcagaactggctgttgcacctgatgaaggagcagcccgagcga
acgcgtgcgggcggtgatgacggcgcggcgcaacggctgatgcgcgaggcggggacggcg
tcgtccgtaggctcgccgcaggcggatacgacgggcagcgcgcacccgctcacccggtcg
acgctccccgcccccatgctcgccaccgccggctcggccgcggacctcgaccgggaggcc
gggtggaggatggagatgaagtgggacggcgtgcgcgcgatcgcgttcacgagcgcctcg
ggcgaggtgacgctcctctcccgcaacggcaccgacctcacccctgcgtatcccgaactc
gccgagctggccgacctcgccccgcctcgctcggtgctcgacggcgagatcgtcgcgctg
aacggccacggcgccccggacttcggggtgctgcagcggcggatgaacctgtcgacgccg
gcgagggtcgaggcggaacgcgagcggactccggtgcacttcatggtgttcgacgccctg
cagctgcgggccgccgacggtgagccccggcggctgctgcgcgcgccctacgcggagcgc
cgcgccgagctcgaggcgcaggtgggcgagggcgagttcgtgcacgtgccgccggtgcac
ggcgacgatctcgaggcggcgatgcgcacgtcgcgcggactccggctcgagggggtgctc
gccaagcgcgacgactcgcactacacctcggggcggcgcacgcgggactggatcaagatc
aagcacgagcgccatcaggaggtcgtggtgatcggctggcggccgcgggcggagaacgcc
gtggagctcgcctcgctcctgctcgccgtgcccgaggacggccggctgcgctacgccggc
cgggtcggcacggggctgcgccaggcggatcgcgccgacatcccgcgagcgttgcactcg
ctcgagcgcaagacaccgccggcgggcgacatcccggccgcgatcgcccgcgatgcgcgg
tgggtgcggccgacccgggtgggcgaggtgcgccatgcgggcccgacccgtgccggcgtg
ctgcggcagccggtctggcgcgggtggcggccggaggtgtccgccgaggaggtgcggtgg
gaggcctga

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