Pseudactinotalea sp. HY158: GCE65_08880
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Entry
GCE65_08880 CDS
T06271
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psei
Pseudactinotalea sp. HY158
Pathway
psei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCE65_08880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psei03400
]
GCE65_08880
Enzymes [BR:
psei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCE65_08880
DNA repair and recombination proteins [BR:
psei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCE65_08880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGH69619
UniProt:
A0A5Q2W0L6
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Position
2024814..2027342
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AA seq
842 aa
AA seq
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MPAAATTAVAGRSLRLTNLDKVLYPATGTTKGDVIDYYVAIAPALIGLAAGRPVTRKRWV
EGVGTAAEPAPGFFRKDLEPDAPVWVPRVTYRHKERTNTYPLATEAAVLAWFGQLAALEL
HVPQWRVDTGGRRSNPDRLVLDLDPGPGAGLAECAEVARLCREVLEGMGLTAVPVTSGST
GIHLYAGLDGSTTSEQASAVAKELARAIEADRPDLAVSTMRKELRGGKVLIDWSQNNAAK
TTICPYSLRGRPRPTVAAPRTWEEIDDPRLAQLQYRQVLERVAAGIDPMSPFGLRSSVDD
DRLATYRSMRDPARTPEPVPADPPQLRTGEKIFVIQEHHASRPHWDVRLERDGVLASWAV
PKGPPLETRSNRLAVRVEDHPLSYATFSGTIPTGEYGAGTVQIWDSGTYTAEKWREGEEV
IVVLHPAASDSPGSPDSPGSSDGTGGLGGLDRRYALIHTGGKPEDEQNWLLHLMKEQPER
TRAGGDDGAAQRLMREAGTASSVGSPQADTTGSAHPLTRSTLPAPMLATAGSAADLDREA
GWRMEMKWDGVRAIAFTSASGEVTLLSRNGTDLTPAYPELAELADLAPPRSVLDGEIVAL
NGHGAPDFGVLQRRMNLSTPARVEAERERTPVHFMVFDALQLRAADGEPRRLLRAPYAER
RAELEAQVGEGEFVHVPPVHGDDLEAAMRTSRGLRLEGVLAKRDDSHYTSGRRTRDWIKI
KHERHQEVVVIGWRPRAENAVELASLLLAVPEDGRLRYAGRVGTGLRQADRADIPRALHS
LERKTPPAGDIPAAIARDARWVRPTRVGEVRHAGPTRAGVLRQPVWRGWRPEVSAEEVRW
EA
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgccgccacgaccgccgtcgcgggccggtccctgcgcctgacgaacctcgac
aaggtgctataccccgccacgggcaccaccaagggcgacgtgatcgactactacgtggcg
atcgccccggcgctcatcgggctcgcggccgggcgaccggtcacccggaagcgctgggtc
gagggcgtgggcacggcggccgagcccgcacccgggttcttccgcaaggatctcgagccg
gacgcccccgtgtgggtgccccgggtgacctaccgtcacaaggagcgcacgaacacctac
ccgctcgcgaccgaggcggcggtgctcgcctggttcggccagctcgccgccctcgagctg
cacgtgccgcagtggcgcgtcgatacgggcggccggcgctccaaccccgaccggctcgtg
ctcgacctcgatcccgggcccggtgccgggctcgccgaatgcgccgaggtcgcgcggctg
tgccgggaggtcctcgagggcatgggcctgaccgccgttccggtgacgtccggctcgacg
ggcatccacctgtacgccgggctcgacggctccaccacgtccgagcaggcctcggcggtc
gcgaaggagctcgcccgggcgatcgaggccgaccgtccggatctggcggtctcgaccatg
cgcaaggagctgcgcggcggcaaggtgctcatcgactggtcgcagaacaacgcggcgaag
accaccatctgcccgtactccctgcggggccggccccggccgaccgtcgccgcgccgcgc
acgtgggaggagatcgacgacccgaggctcgcgcagctgcagtaccggcaggtgctcgag
cgggtggccgccggcatcgacccgatgtcgccgttcggcctgcgctcgagcgtggacgac
gaccggctcgccacgtaccgttcgatgcgcgatccggccaggacgcccgagccggtgccg
gccgacccgccgcagttgcgcaccggggagaagatcttcgtgatccaggagcaccacgcg
tcccggccgcactgggatgtccggctcgaacgcgacggcgtgctcgccagttgggccgtg
cccaagggcccgccgctggagacgcgctcgaaccggctcgcggtccgcgtcgaggaccac
ccgctgtcctatgccacgttctcgggcacgatccccacgggcgagtacggcgccggcacc
gtgcagatctgggattcgggcacctacaccgcagagaagtggcgcgagggcgaggaggtg
atcgtcgtactccaccccgccgcctccgactcccccggctcgcccgactcgcccggctcc
tccgacggcaccggcggcctcggcggtctcgatcgccggtacgccctcatccacaccggc
ggaaagcccgaggacgagcagaactggctgttgcacctgatgaaggagcagcccgagcga
acgcgtgcgggcggtgatgacggcgcggcgcaacggctgatgcgcgaggcggggacggcg
tcgtccgtaggctcgccgcaggcggatacgacgggcagcgcgcacccgctcacccggtcg
acgctccccgcccccatgctcgccaccgccggctcggccgcggacctcgaccgggaggcc
gggtggaggatggagatgaagtgggacggcgtgcgcgcgatcgcgttcacgagcgcctcg
ggcgaggtgacgctcctctcccgcaacggcaccgacctcacccctgcgtatcccgaactc
gccgagctggccgacctcgccccgcctcgctcggtgctcgacggcgagatcgtcgcgctg
aacggccacggcgccccggacttcggggtgctgcagcggcggatgaacctgtcgacgccg
gcgagggtcgaggcggaacgcgagcggactccggtgcacttcatggtgttcgacgccctg
cagctgcgggccgccgacggtgagccccggcggctgctgcgcgcgccctacgcggagcgc
cgcgccgagctcgaggcgcaggtgggcgagggcgagttcgtgcacgtgccgccggtgcac
ggcgacgatctcgaggcggcgatgcgcacgtcgcgcggactccggctcgagggggtgctc
gccaagcgcgacgactcgcactacacctcggggcggcgcacgcgggactggatcaagatc
aagcacgagcgccatcaggaggtcgtggtgatcggctggcggccgcgggcggagaacgcc
gtggagctcgcctcgctcctgctcgccgtgcccgaggacggccggctgcgctacgccggc
cgggtcggcacggggctgcgccaggcggatcgcgccgacatcccgcgagcgttgcactcg
ctcgagcgcaagacaccgccggcgggcgacatcccggccgcgatcgcccgcgatgcgcgg
tgggtgcggccgacccgggtgggcgaggtgcgccatgcgggcccgacccgtgccggcgtg
ctgcggcagccggtctggcgcgggtggcggccggaggtgtccgccgaggaggtgcggtgg
gaggcctga
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