Paraoerskovia sediminicola: GCM125_20480
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Entry
GCM125_20480 CDS
T09128
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM125_20480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_20480 (mfd)
Enzymes [BR:
psek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM125_20480 (mfd)
DNA repair and recombination proteins [BR:
psek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCM125_20480 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDZ42749
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All DBs
Position
2144021..2147719
Genome browser
AA seq
1232 aa
AA seq
DB search
MNLTGLLPALLADEAASAAVERVRLRGEVDVVGPAGIRPPLLAAMSGALSGARAGGTTGR
PLVVVTATGREADELAANVRAYLPDERHDDVAVLPSWETLPHERLSPRSDTVAKRIAVFR
RLAHPTPDGGPTGAVRILIMPARALLQPVVDGLGELVPVELHVGDAADLTEVGDALTAAA
YSRVDMVERRGEYAVRGGILDVFPPTEDHPLRIEFWGDEVSEVRWFSVADQRSLEVAEHG
LWAPPCREILLTDAVRDRASALVDQLPGAVEMLDKLGAGIAVEGMESLAPMLVDRMVPVL
DLVPDDALVVLDEPEKVRRRAHDLVATTQEFLAAAWTGAAAGGSTPIDLSAASFHTFADC
RDVAARRGLGWWTLSAFGLDDPDLDALPEGADGAGSPERPGAGTSSDTGNSGVDEGGATT
LTIAAREVESYRGDVARAIADVRALQRDGWRLVLTTEGSGPAQRMVEQLSSEDTAARLVP
HLDAEPEGGVVLVTPARVGPGYVLPDLRLAVFSESDLTGRQGTSTKDMRKMPSRRRNVVD
PLALKPNDFVVHEQHGVGRFIELIQRSFGAGGNAATREYLVIEYASSKRGQPGDRLFVPT
DQLDQVTKYTGGESPSLNKMGGSDWQKTKSRARKHVKEIASELIRLYSARMATEGHAFGP
DTPWQRELEDAFEHIETPDQLATIDEVKADMEKTVPMDRLVCGDVGYGKTEIAIRAAFKA
VQDGKQVAVLVPTTLLVQQHHDTFAERYSGFPVNVRSLSRFQTAKESEATIAGLKDGSVD
VVIGTHRIITGSVKFKDLGLVIIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEM
AVTGIREMSTLATPPEERHPVLTYVGAYEEKQIAAALRRELLREGQVFYVHNKVESIERA
AGKLAQLVPEARVGVAHGKMNEHQLDQVIRAFWEKELDVLVCTTIIETGLDISNANTLIL
ERSDQLGLSQLHQLRGRVGRGRERAYAYFLYPPEKPMTETAHDRLATMAAHTDLGAGMQI
AMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVASFRGDAEDEQPEISIELPVDA
HIPEKYIAHERLRLEAYKKIATAQDEPALAEVRAELTDRYGAPPETVQALFDVASFRNHA
RAAGLADVTAQGKHIRFGPVDLLESAELRLKRLYPGTIQKPAIRSVLVPFPMTARLGGRP
LRGAEILVWARQWIDAIVLGKVGDAAAVSSRR
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcaccgggcttctgcctgcccttctcgccgacgaggccgcgagcgccgccgtc
gagcgcgtccggctgcgcggcgaggtggacgtcgtcggtccggccgggatccgcccgccc
ttgctcgccgcgatgtccggtgcgctgtcgggtgcacgtgcgggaggcacgaccggccgc
cccctcgtcgtcgtcaccgccacgggccgcgaggccgacgagctcgccgcgaacgtccgc
gcgtatctcccggacgagcggcacgacgacgtcgcggtcctcccgagctgggagaccctc
ccgcacgagcgtctctcgccccgtagcgacacggtcgccaagcgcatcgccgtcttccgt
cgtctcgcgcacccgacgccggacggcggcccgacgggcgccgtccggatcctgatcatg
cctgcccgggccctgctccagccggtcgtcgacggtctgggcgagctggtccccgtcgag
ctccacgtgggcgacgcggcggacctgaccgaggtgggcgacgccctgacggccgcggcg
tacagccgcgtggacatggtggagcgccgcggcgagtacgcggtgcgcggcgggatcctc
gacgtgttcccgcccaccgaggaccacccgctgcggatcgagttctggggcgacgaggtc
agcgaggtccgttggttctcggtcgccgaccagcgctcgctcgaggtggccgagcacggc
ctgtgggcgccaccgtgccgggagatcttgctcaccgacgccgtccgcgaccgcgcgagc
gcgctcgtcgaccagctcccgggcgcggtcgagatgctcgacaagctcggcgccgggatc
gcggtcgagggcatggagtccctcgccccgatgctggtcgaccggatggtccccgtcctg
gacctcgtgccggacgacgccctcgtcgtcctcgacgagcccgagaaggtccgtcgacgc
gcccacgacctcgtcgccacgacccaggagttcctggcggcggcgtggaccggcgcggcc
gccggcgggtcgaccccgatcgacctgtccgcagcgtcgttccacaccttcgccgactgc
cgcgacgtcgccgcgcgccgcggcctcggctggtggaccctcagcgccttcggtctcgac
gacccggacctcgacgcgctccccgagggggcggacggcgcagggtcacccgagcgcccg
ggtgcagggacgtcgtccgacaccggcaacagcggagtggacgagggcggggcaaccacc
ctcaccatcgctgcgcgcgaggtcgagtcctaccggggtgacgtggcgcgggcgatcgcc
gacgtgcgcgcgctccagcgcgacggctggcggctcgtcctcacgaccgaggggagcggc
ccggcccagcggatggtcgagcagctgtcgtcggaggacacggcggcgcggctcgtgccg
cacctggacgccgagcccgagggcggcgtcgtcctcgtcaccccggcgcgggtcggaccc
ggctacgtgctgcccgacctgcggctcgcggtgttctccgagagcgacctcaccgggcgg
caggggaccagcaccaaggacatgcggaagatgccgtcgcggcggcgcaacgtcgtcgac
ccgctggcgctcaagcccaacgacttcgtggtccacgagcagcacggcgtcgggcgcttc
atcgagctgatccagcggtcgttcggcgcgggcggcaacgcggcgacgcgcgagtacctc
gtcatcgagtacgccagcagcaagcgtggtcagccgggggaccggctgttcgtgccgacc
gaccagctcgaccaggtcaccaagtacaccggcggggagtcgccgtcgctcaacaagatg
ggcggctccgactggcagaagaccaagtctcgcgcccgcaagcacgtcaaggagatcgcg
agcgagctgatccggctctactcggcgcgcatggcgaccgaggggcacgccttcggcccg
gacaccccgtggcagcgcgagctcgaggacgcgttcgagcacatcgagacacccgaccag
ctcgcgacgatcgacgaggtcaaggccgacatggagaagacggtcccgatggaccgtctc
gtctgcggcgacgtcggctacggcaagacggagatcgcgatccgcgcggcgttcaaagcg
gtgcaggacggcaagcaggtcgccgtgctcgtccccacgacgctgctcgtccagcagcac
cacgacacgttcgccgagcggtacagcgggttcccggtcaacgtgcgctcgctgtcccgg
ttccagacggccaaggagtccgaggccacgatcgccggcctcaaggacgggtcggtggac
gtcgtcatcggcacgcaccggatcatcaccgggtcggtgaagttcaaggacctcggcctc
gtcatcatcgacgaggagcagcgattcggggtcgagcacaaggagacgctcaagcagctg
cggaccaacgtcgacgtgctcgcgatgagcgcgacgccgatcccgcgcacgctcgagatg
gccgtcaccgggatccgcgagatgtcgacgctcgcgacgccaccggaggaacggcacccc
gtgctcacgtacgtgggcgcctacgaggagaagcagatcgccgccgcgctgcgccgcgag
ctgctgcgcgaaggccaggtcttctacgtccacaacaaggtcgagtccatcgagcgggcc
gcgggcaagctcgcccagctcgtgcccgaggcgcgcgtcggcgtcgcccacgggaagatg
aacgagcaccagctcgaccaggtgatccgcgctttctgggagaaggagctcgacgtcctc
gtctgcacgacgatcatcgagaccggcctcgacatctccaacgcgaacaccctgatcctc
gagcggtccgaccagctcgggctctcacagctccaccagctccgcggtcgcgtcgggcgt
ggccgcgagcgtgcctacgcgtacttcctgtacccgccggagaagccgatgaccgagacg
gcccacgaccggctcgcgaccatggctgcgcacacggacctcggtgccggcatgcagatc
gcgatgaaggacctcgagatccgcggggcgggcaacctgctcgggggcgagcagtcgggg
cacatcgccggcgtcgggttcgacctgtacgtgcggatggtgggggaggccgtcgcgtcg
ttccgcggtgacgccgaggacgagcagcccgagatcagcatcgagctgcccgtcgacgcg
cacatccccgagaagtacatcgcgcacgagcggctccggctcgaggcgtacaagaagatc
gccaccgcgcaggacgagcccgcgctcgccgaggtccgcgccgagctcacggaccgctac
ggcgcgccgccggagacggtccaggcgctgttcgacgtggcgagcttccgcaaccacgcg
cgcgccgccgggctcgcggacgtcaccgcgcagggcaagcacatccggttcgggccggtc
gacctgctcgagtcggccgagctgcggctcaagcgcctgtaccccggcacgatccagaag
cccgcgatccggtcggtgctcgtgccgttcccgatgaccgcgcggctcggtgggcggccg
ctgcggggcgcggagatcctcgtgtgggcgcgtcagtggatcgacgcgatcgtgctgggg
aaggtcggcgacgccgccgccgtcagctcgcgacgctga
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