Pseudomonas sessilinigenes: C4K39_2057
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Entry
C4K39_2057 CDS
T07575
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psep
Pseudomonas sessilinigenes
Pathway
psep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4K39_2057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psep03400
]
C4K39_2057
Enzymes [BR:
psep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4K39_2057
DNA repair and recombination proteins [BR:
psep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4K39_2057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZC23741
LinkDB
All DBs
Position
complement(2137519..2140968)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAATGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQKLDVEQMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSIRLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLTSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRIDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIETGVGRERFAARELPNL
AIEAKANQPLAALATFLDEFPGRVLFTAESAGRREVLLELLERLKLRPRTVDSWPDFVAS
KERLAITIAPLDEGLALDEPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLSPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSTAVQDLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITTDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLIRLTQLKLQAEQLGIKKI
DGGPQGGRIEFAADTPVDPLALIKLIQGQPKRYKFEGATLFKFMVPMERPEERFNTLEAL
LESLTPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgtcctgcgtctaccgctactcccagccgccaccggcaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaagcggccagcgccgccaagcgcttc
accctcctgctgaccgccgacagccaaagcgctgaccgcctggaacaggagttgagcttc
tttgccccggacttgccggtcctgcatttccccgattgggaaaccctgccctacgacctg
ttttccccccaccaggacatcatttcccagcgcatcgccagcctgtatcggttgcccgag
ctggagcatggcgtactggtggtaccgatcaccaccgccctgcaccgcctggcgccgacc
cagttcctgctgggcagcagcctggtgctggacgtgggccagaagctcgatgtggaacag
atgcgcacccgcctggaggccagcggctatcgctatgtggatacggtgtacgaacacggc
gagttcaccgttcgcggcgccctgatcgacctgttccccatgggcagcaagctgccctac
cgcatcgatctgttcgatgacgaaatcgaaaccttgcgcaccttcgacccggaaaaccag
cgttccatcgacaaggtcgactccatacgcctgttgccggccaaggagttccccctgcag
aaggaggcggtcacccgcttcaaggcccgctttcgcgaacgcttcgacgtcgacttccgc
cgctgcccgatcttccaggacctgaccagcggaatcactccggccggtatcgagtactac
ctgccgctgtttttcgaagagacctcgaccctgttcgactacctgccccaggacacccag
gtgttttccctgcccggcatcgaacaggccgcggagaacttctggaacgacgtgcgcaac
cgctacgaagagcggcgcatcgacccttcgcggccattgctgccgccggccgaactgttc
ctcccggtggaagactgcttcgcccgcctgaagaactggcctcgggtggtcgccagccag
caggacatcgagacgggtgtcggacgcgaacgctttgccgcacgcgaactgcccaacctg
gccatcgaagccaaggccaaccaaccgttggcggcgctggccaccttcctcgatgaattc
ccgggccgcgtgctgttcaccgccgagtccgccggccgccgcgaagtcttgctggaactg
ctggagcgcctcaagttgcgccccaggacggtcgacagctggccggacttcgtcgccagc
aaggagcgcctggccatcaccatcgcgcccctggatgaaggcctggccctggacgagcca
gccctggcgctggtcgcggaaagcccactgttcggccagcgcgtgatgcaacgcaggcgt
cgggaaaaacgtgccgacgccaacaacgatgccgtgatcaagaacctcaccgaattgcgt
gagggcgcaccggtggtgcatatcgatcatggtgtcggccgctacctgggcctggcgacc
ctggagatcgacaaccaggccgccgagttcctcacccttgagtacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctataccggcagcgacgatgcc
ctcgcacccctgcaccgcctgggctccgaggcttggcaaaaggccaagcgcaaggccgcc
gaacaggtgcgcgacgtggccgccgagctgctggatatctatgcccgccgggcggcccgg
gaaggttatgccttcgccgaccccaaggccgactatgcgaccttcagtgccggcttcccc
ttcgaggagaccccggaccagcagagcaccatcgaagcggtgcgcgaggacatgctctcg
cccaagccgatggaccgcctggtctgcggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgcagccttcatcgcggtgcacggcggcaagcaggtggcgatcctggtccccacc
actctgctcgcccagcagcactacaacagctttcgcgatcgcttcgccgactggccggta
accgtcgaggtcatgagccgcttcaagtcggccaaggaggtcagcacggcggtacaggac
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgttgcaggacgatgtg
aagatcaagaacctggggctggtgatcatcgacgaagaacaccgcttcggcgtacgccag
aaagagcagctcaaggccctgcgcagcgaagtggacatcctcacgctcaccgccacgccg
ataccgcgtaccctgaacatggcggtatcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccgacggctgtcggtacgcaccttcgtcatggaacagaacaagagcacggtc
aaggaggccctgctgcgcgagctgctgcgtggtggccaggtgtattacctgcacaacgac
gtgaagaccatcgagaagtgtgccgccgaccttgccgaactggtgccggaagcgcgaatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagtgacttctat
cacaagcgcttcaacgtcctcatcgcctcgaccatcatcgagaccgggatcgacgtgccc
agcgccaataccatcatcatcgaacgggccgacaagttcggcctggcccagctgcaccaa
ttgcgcggccgggtcggccgcagccaccaccaggcctatgcctacctgctcacgccaccg
cgccagcagatcaccacggatgcggaaaagcgcctggaggcgatcgccaacacccaggac
ctgggagccggtttcgtcctggccaccaacgacctggagatccgcggtgccggcgagctg
ctgggggatggccagagcggccagatccaagcggtgggcttcaccctgtacatggagatg
ctggagcgggcggtgaaggccattcgcaagggcgaacaacccaacctcgaccaacccctg
ggcggcggcccggaaatcaacctgcgcctgccggcactgattcccgaggactacctgccg
gatgtccacgctcgcctgatcctctacaagcgcatcgcctcggccaccgacgaagatggc
ctgaaggacctgcaagtggaaatgatcgaccgcttcggcctgttgccggagccgaccaag
aacctgatccgcctgacccagctcaagctccaggccgagcaactggggatcaagaagatc
gatggcggcccccagggtgggcgtatcgagttcgccgcggacaccccggtggacccgctg
gccttgatcaagctgatccagggccagcccaagcgctacaaattcgaaggcgccacgctg
ttcaagttcatggtgccgatggaacgcccggaagagcgctttaatacattggaggccctg
cttgagagcctcaccccgaaaactgcttga
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