Pseudomonas sp. StFLB209: PSCI_3763
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Entry
PSCI_3763 CDS
T03623
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSCI_3763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_3763
Enzymes [BR:
pses01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSCI_3763
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSCI_3763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AroM
DUF6732
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAP44465
UniProt:
A0A077LIM1
LinkDB
All DBs
Position
complement(4218196..4221645)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRLPHLPAAAGKQHWGNLQGAALSLAIAEAASAARRFTLLLTADSQSAERLEQELKF
FAPELAVLHFPDWETLPYDLFSPHQDIISQRISSLYRLPELDHGVLVVPITTALHRLAPT
RFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALLDLFPMGSKLPY
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAKEFPLHKDEVVRFKARFRERFDVDFR
RSPIFQDLNSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRIDPNRPLLPPAELFLPVEDCFARLKNWPRVVASQQDIEAGAGRERFPAQPLPEL
AIEAKASQPLAALSNFLDQFPGRVLFTAESAGRREVLLELLDRLKLRPKTVEGWQDFVAG
TERLAITIAPLDEGLVLDDPSLALVAESPLFGQRVMQRRRREKRAEHGNDAVIKNLTELR
EGAPVVHIDHGVGRYQGLATIEVDNQVAEFLTLVYADDAKLYVPVANLHLIARYTGSDDE
LAPLHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFEDPKADYATFSAGFP
FEETPDQQSSIEAVRADMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KFKNLGLVIIDEEHRFGVRQKEQLKNLRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKPTVKEALLRELLRGGQVYYLHNDVKTIEKCASDLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRKQVTPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIANATDEDGLKDLQVEMIDRFGLLPEPTKSLVRITHLKLVAEQLGISKI
DAGPQGGRIEFAANTPVDPLTLIKLIQGQPNRYKFEGATLFKFMVPMERPEERFNTIEAL
LERLTPKSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgttctgcgcctaccgcatctgcctgccgccgccggcaaacaacactggggcaac
ctgcaaggtgccgccttaagcctggccatcgccgaagctgccagcgccgcgcggcgcttt
accctgttgctgaccgctgacagccagagtgccgagcgtcttgagcaggagctgaaattc
ttcgccccggagcttgcggtgctgcatttcccggactgggaaaccctaccctacgacctg
ttctcgccgcatcaggacatcatttcgcagcggatctccagcctgtaccgcctgccggaa
ctggaccacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggccccgacc
cgattcctgctgggcagcagcctggtgctggatgtcggccagaagcttgacgtcgaagcc
atgcgcactcggctggaggccagcggctaccgctacgtcgacacggtttacgagcatggc
gagttcaccgtgcgcggggccctgctggacctgttcccaatgggcagcaaactgccttat
cggatcgacctgttcgacgatgaaatcgaaaccctgcgcaccttcgacccggacacccag
cgctcaatcgacaaggtcgagtctgtgcgcctgctgccggccaaggaatttccgctgcac
aaggatgaagtggtgcgcttcaaggcgcgctttcgcgaacgcttcgatgtcgactttcgc
cgcagcccgatcttccaggacctcaacagcggcatcaccccggccgggatcgagtattac
attccgctgtttttcgaagaaacctcgaccctgttcgattacctgccgcaggacacccag
gtgttctccctgcccggcatcgagcaggcggccgagaacttctggaacgacgtacgcaat
cgttatgaagaacggcgcatcgaccccaaccggccgctgctgccgcctgccgaactgttc
ctgccggtggaagactgctttgcccgcctgaagaactggccgcgggtggtcgccagccag
caggacatcgaagccggtgccggtcgcgaacgtttcccggcccagcccttgccagaactg
gccatcgaagccaaggccagtcagccactggcggcgctgtcgaacttcctcgatcagttc
cccggccgcgtgctgttcaccgccgaatcggccggccgccgcgaggtgctgctggaactg
cttgatcgcctcaaactgcggccgaaaaccgtcgagggctggcaggatttcgtcgccggc
actgaacgtttggcaatcaccatcgcgccgctggatgaaggcctggttctcgatgaccca
tccctggcgctggtcgccgagagcccgctgttcggtcagcgggtcatgcagcgcaggcgc
cgggaaaaacgcgccgagcacggcaacgatgcggttatcaagaaccttaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggggtgggccgctatcaggggctggcgacc
attgaggtcgacaaccaggtcgccgagttcctgaccctggtgtacgccgacgacgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgatgacgaa
ctggcaccgctgcaccggctgggttcggaagtctggcagaaggccaagcgcaaggcggcc
gaacaggtccgcgacgtggccgccgaactgctggacatttacgcccgccgcgcagctcgc
gaaggttatgccttcgaagacccgaaagccgattacgcgacgttcagcgccgggttcccg
ttcgaagaaactcccgaccaacagtcgagcatcgaggccgtacgcgccgacatgctcgcc
gccaaacccatggatcgcctggtgtgtggcgacgtgggctttggcaagaccgaagtggcc
atgcgcgctgcgttcattgccgtgcatggcggccgccaggtcgcggtgctggtgcccacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtc
aaggtcgaggtgatgagccgcttcaaatcggccaaggaagtcaacgccgccgtggccgat
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgctctcggacgatgtg
aagttcaagaacctgggcctggtgatcatcgacgaagaacaccgcttcggggtgcgccag
aaagaacagctgaaaaacctgcgcagtgaagtcgacatcctgaccctgaccgccacaccg
atcccgcgcaccttgaacatggcagtgtcaggcatgcgcgacctgtcgatcatcgccacc
ccgccagcccgtcggctgtcggtgcgcaccttcgtcatggagcagaacaagcccacggtc
aaggaagcgctactgcgtgaactgctgcgcggcggccaggtgtactacctgcacaacgac
gtgaagaccatcgagaaatgcgcctccgacctcgctgaactggtgcccgaggcccgcatc
ggcatcgggcacggacaaatgcgcgagcgtgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccagttgcaccag
ttgcgcggccgggtcgggcgcagtcaccaccaggcctatgcctacctgctgaccccgccg
cgcaagcaggtcaccccggatgccgaaaagcgtctggaagcaatcgccaatacccaggac
ctgggcgccggtttcgtgctggccaccaacgacctggaaattcgcggcgccggtgaactg
cttggcgacggccagagcggccagatccaggcggtgggcttcactctgtacatggaaatg
ctcgaacgtgcggtcaaggccattcgcaaaggcgaacagcccaacctcgaccagccgctg
ggcggcggcccggaaatcaacctgcgcgtaccggcactgattcccgaggactacctgccc
gacgtgcatgcacggctgatcctctacaagcgcatcgccaacgccaccgacgaagacggc
ctcaaggatctgcaggtcgaaatgatcgaccgcttcggcctgctgcctgagccgaccaaa
agcctggtgcgcatcactcacctgaaactggtcgccgagcaactggggatcagcaagatc
gacgccgggccgcagggcgggcgtatcgagttcgcggccaacacgccggtcgacccgctg
accctgatcaagctgattcagggccagcccaaccgttacaaattcgaaggcgccacgctg
ttcaaattcatggtgccgatggaacgccctgaggagcgcttcaacaccattgaggcgctg
ctggagcgcctgaccccgaaatctgcctga
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integrated database retrieval system
