Pseudomonas sp. TCU-HL1: THL1_1996
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Entry
THL1_1996 CDS
T05373
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pset
Pseudomonas sp. TCU-HL1
Pathway
pset03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pset00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THL1_1996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pset03400
]
THL1_1996
DNA repair and recombination proteins [BR:
pset03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THL1_1996
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THL1_1996
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
AOE84544
UniProt:
A0A1B3E4S2
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All DBs
Position
2146610..2148625
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AA seq
671 aa
AA seq
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MSEFQLVTRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVISQVQRPTL
VLAPNKTLAAQLYGEFRAFFPNNSVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDHIEQ
MRLSATKALLERPDAIIVATVSSIYGLGDPASYLRMVLHIDRGDRIDQRTLLRRLAELQY
TRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLAAFDPLTGEVIRKLPRF
TFYPKSHYVTPREVLLEAVDHIKAELKERLEQLRGANKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRAPGEPPPTLYDYLPGNALLVIDESHVTVPQVGAMFKGDRSRKETL
VEYGFRLPSALDNRPLRFDEWEAISPQAIFVSATPGPYEGEHAGRVVEQVVRPTGLVDPE
VEVRPATTQVDDLLSEIRKRVAVEERVLVTTLTKRMAEDLTDYLADHDVKVRYLHSDIDT
VERVEIIRDLRIGAFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADKVTGSMQRALDETERRRIKQVAFNEVHGIVPKGVKKDIQDILEGATV
PGSRSNKRKAMAKAAEESARYEAELRSPSEITKRIRQMEERMFQLARDLEFEAAAQLRDE
IQKLRERLLKV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagttccagcttgtcacccgtttcaagcccgccggcgaccagccggaggccatt
cgccagatggtggaagggctcgaagccggcctttcgcaccagacgctgctgggtgtgacg
gggtcggggaagacattcagtatcgccaacgtcatttcccaggtgcagcgcccgacgctg
gtcctggcgcctaacaagacattggctgcgcagctctatggagagttccgggcgttcttt
ccgaacaattcggtcgagtacttcgtgtcgtactacgactattaccagccggaagcctac
gtcccttcgtccgacacctacatcgagaaggatgcttcgatcaacgaccacatcgagcag
atgcgcctctccgcgaccaaggccttgctcgaacggccggatgccatcatcgtcgccact
gtttcttctatctatggcctgggtgacccggcgtcgtacctgcgaatggtccttcacatc
gatcggggtgaccgaatcgaccaacgaaccttgctgcgtcgcctggcggagttgcagtac
acccgtaatgacatggatttcgcccgcgccaccttccgggttcgcggtgatgtgatcgat
atcttcccagcggaatccgaccttgaggcgattcgtgtcgagttgttcgatgatgaggtc
gagagcctggctgccttcgacccgcttaccggggaggttatccgtaagctgccgcgattc
accttctaccccaagagccactatgtgacgccgcgcgaggtgctgttggaggcggtcgac
catataaaggcagagttgaaagaacgcctggagcagttacggggtgccaacaagctggtt
gaggcgcagcgcctggaacagcgcacgcgtttcgatctcgagatgatcctggaactgggt
tactgcaacggcatcgagaactactctcgctacctctcggggcgtgcccctggtgagccg
ccacccaccctctacgattacctgccgggcaatgccttgctggtcatcgatgaatcccac
gtcacggtcccgcaggttggcgccatgttcaagggcgaccgctcgcggaaggaaaccctg
gtggaatacggttttcgcctgccatcggcgctggacaaccgaccgctgcggttcgacgag
tgggaggcgatcagcccgcaggccatcttcgtctcggcgacgccagggccctacgagggc
gagcatgccgggcgcgtggtcgagcaggtcgtgcgcccgaccgggctggtggatccggaa
gttgaagtgcgcccggcaaccactcaggtggatgatctgctttccgagattcgcaagcgt
gtggccgtcgaggagcgggtgctggtcacgaccctgaccaagcgcatggcggaggatctg
accgactatctcgccgatcacgatgtgaaagtgcgttacctgcactccgacatcgacacc
gtggagcgcgtggaaattatccgcgacctgcggatcggcgccttcgatgtactggtgggc
atcaacctgcttcgcgaaggcctggatatgccggaggtagctctggtcgcgatcctggat
gcggacaaggaaggcttcctgcgttcggagcgctcgctgatccagaccattggtcgtgct
gcgcgaaacctcaatggcagggcaatcctctacgccgacaaggtcaccggctcgatgcag
cgggccctcgatgagaccgagcggcggcgaatcaagcaggtggctttcaacgaggtccac
ggcatcgtgccgaaaggtgtgaagaaggacattcaggacattctcgaaggcgccacggtg
ccgggctcgcgcagcaacaagcgcaaggccatggccaaggcggcggaggagagtgcccgt
tacgaggcggagttgcgttcgccgagcgaaatcaccaagcgcattcgccagatggaagag
aggatgttccagctggcccgcgatctggagttcgaagcggcggcgcagttgcgcgatgag
atccagaaattgcgtgagcgcttgctcaaggtctga
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