Pseudanabaena sp. PCC 7367: Pse7367_2383
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Entry
Pse7367_2383 CDS
T02369
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pseu
Pseudanabaena sp. PCC 7367
Pathway
pseu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pseu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pse7367_2383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseu03400
]
Pse7367_2383
Enzymes [BR:
pseu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pse7367_2383
DNA repair and recombination proteins [BR:
pseu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pse7367_2383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFY70644
UniProt:
K9SLG5
LinkDB
All DBs
Position
complement(3007367..3010906)
Genome browser
AA seq
1179 aa
AA seq
DB search
MAFSSVVRSLIRSPLLAELESKLTKSQSLNLNGIPRLPKGLIAAAIAQKQDRSLLVITAT
IEEAGRWAVQLEAMGWSAVHFYPTSDAVPYEPYTPESDIIWGQMQVLAELLKQGAADPDQ
LNKPDKPSKPMAIVACDRALQVHLPSIEQFKAACLNLSIGQELGLGQLAKQLAEMGYERT
NMVDAEGQWSRRGDIVDIFPTSSELPVRLDWFGDQIEKIREFDPATQRTLDAIDAISVTP
VSYTAILGDLSDLGDGSNPEAVEKFKELESVSTDLPESEPKTLAVHPKSTASLVDYLPMD
CVIAIDEIEQCQAHSDRWYESAAAAYGHLLENLESIDQKDDLAIAPLHRSFSDCLEMVEI
FDCLYLSEIAEENKGLNLSCRPIPATPHQFASLAKMIREYRDKYYAVTLVSAQPSRTVAL
LQEHDCPAQFVPNSRDFPAIEKLNNVSTPVALKYSGLAEMQGFILPTFRLVLVSDREFFG
QHALGTPTFVRRRRRAASKQVDINKLSPGDYIVHKHHGIGKFLRLESLTINHETREYLVI
KYEDGLLRVAADQVGTLSRFRRTSEGAPRLNKMTGKAWANTKNKVRKAIKKIAIDLLKLY
AQRAQQMGFAFPVDMPWQEELEDSFPYQPTPDQLKAIQDVKQDMESDRPMDRLVCGDVGF
GKTEVAVRAIFKALTTGKQSALLAPTTILAQQHYHTFQERFAPYPIKVALLNRFKTANER
KEIIQKLKTGEIDLVIGTHQILSKEVKFKDLGLLVVDEEQRFGVAQKEKIKTLKTEVDVL
TLTATPIPRTLYMSLSGVREMSLIATPPPSRRAIKTHLSRYNDETVRTAIRQELDRGGQI
FYVVPRIEGMEQIMTRIREMIPSARLAIAHGQMPESELESTMLAFNSGEADVLICTTIIE
SGLDIPRVNTIIIEDAQKFGLAQLYQLRGRVGRAGVQAHAWLFYQPKGELTPPAYKRLRA
IQEFTHLGSGYQLAMRDMEIRGVGNLLGAEQSGQINVVGFDLYMEMLQEAINEIRGSEII
EVDDTQVDLPITAFIPADYMPDADQKMSAYRAVAAVNSRRELASILEEWRDRYGNVPQPA
QQLIKVMELKLVAKKIGFSRIRPEHKQHVVLETKLEEPAWKILQQRLPAHLHSRFVYQPG
KVTVRGLAVMPTAKQLDSLIEWFELMQATKTVEIVAVNS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctgttgttcggtctttgatccgatcgcccctgcttgcggaactggaa
agcaagctaaccaaatcccaaagccttaacttaaatggtataccaagattgcccaagggc
ctgattgctgccgcgatcgcccagaaacaggatcgatcgctactggtgattacagccaca
attgaagaagctggacgttgggcagtgcaactggaagcaatgggctggtcagcggtgcat
ttttaccctacttccgatgcggtgccctatgagccatatacacctgaatcggatattatc
tggggtcaaatgcaggtgctggcggagttactcaaacagggtgctgccgatcccgatcaa
ctaaataaaccagataaacccagcaaaccaatggcgatcgtggcctgcgatcgcgccttg
caagttcatttaccatcgatcgaacaattcaaagccgcttgtctgaatttgtctattggc
caagagctgggcttggggcaactggcaaagcaactggccgagatgggctatgagcgcacc
aatatggtggatgcagaagggcaatggagtcggcgtggcgatattgtggatattttccct
acttccagtgagttaccggtcaggctggattggtttggcgatcagattgagaaaatccgc
gaatttgacccagccacccaacgcaccctggacgcgatcgatgccatcagcgttaccccg
gtcagttatacagcgattctgggtgacctaagcgatttgggcgatggctctaatccagaa
gcagttgagaaatttaaagaattagagtcagtttccactgatttacctgaatccgagccc
aagactctggctgtgcatcctaaatctactgcttcgctggtggattatttgcccatggat
tgtgtaattgcgatcgacgagatcgagcaatgtcaagcccatagcgatcgttggtatgaa
tcggcggcggcggcctatgggcatttattagagaatttagaaagtattgatcaaaaagat
gatctagcgatcgcaccgctacatcggagttttagcgattgtctagagatggtggaaata
ttcgattgtctttatctgtcagagatcgcggaagagaataagggcttgaatctttcctgt
cggccaattccggccacgccccatcaatttgcgagtttggccaaaatgatccgcgaatac
cgcgataagtattatgccgttaccctggtttcggctcagccctcacgcactgtagccttg
ctgcaagagcacgattgcccggcgcagtttgtccccaatagccgtgacttccccgcgatc
gaaaagctcaacaacgtctccactcccgttgcgcttaaatattctggcctggccgagatg
caagggtttattttgcccacgttcaggctagtgctagtcagcgatcgggagttctttggt
caacatgccctgggcacaccaacctttgtgcgtcgccgtcgccgtgctgcctccaagcag
gtagacatcaataagctttcgcctggtgattatattgtccacaagcatcatggcattggt
aaattcctgcgcctggaaagcctgacgatcaaccatgaaacccgcgaatacctggtaatc
aaatacgaagacgggctattgcgggtggccgccgatcaagtgggaaccctatcccggttc
cggcgtacttccgaaggtgcgccccgcctcaataaaatgactggcaaagcctgggcgaat
actaaaaacaaagtgcgcaaggcgatcaaaaaaattgcgatcgacctgctcaaactctat
gcccaacgggcgcaacagatgggttttgctttcccagtcgatatgccctggcaagaggaa
ctagaggattcatttccctatcaacctacccccgatcaactcaaggcgatccaggacgta
aagcaagatatggagagcgatcgccccatggatcgattggtttgcggtgatgtggggttt
ggtaaaaccgaagtggcagtgcgggcaattttcaaagctcttactactggcaaacaatcg
gctctacttgctcccactacgatcctggcgcagcagcattatcacaccttccaggaacgt
ttcgccccctatccaatcaaggtggcgttgctgaatcggtttaaaactgccaatgaacgc
aaagaaattatccaaaaactcaaaactggcgaaatagacctggtgatcggcacccatcag
atcttgtcaaaggaagttaagttcaaggatctgggcttgctggtggtggatgaagaacag
cgctttggcgtagcccaaaaggaaaaaatcaaaaccctcaaaacggaagtagatgtgttg
accctgaccgccacaccgatcccgcgcactctctatatgtcgctgtcgggcgtgcgggaa
atgagcctgatcgccacaccaccgccatcccgccgcgcgatcaaaacccacctgtcgcgc
tacaacgatgaaacggtgcgcaccgcaatccgccaggaactcgatcgcggtggccaaata
ttctatgtggtgcctcgcattgaaggaatggaacagatcatgacccgcatccgcgagatg
atcccgtcggcacggttggcgatcgcccacggtcaaatgccagaatcagaactagagtca
accatgctggcgtttaatagtggtgaagcggatgtattgatttgcaccacaatcattgag
tctggcctggatattccccgcgtgaatacgatcatcattgaggatgcccaaaaatttggt
ctggcgcagctctatcaattgcgaggtcgggttggtcgcgctggggtgcaagcccatgcc
tggttgttctatcaacccaagggcgaactcacaccacctgcctataaacgcctgcgagcg
atccaggagtttacgcacctgggctccggctatcaattggcaatgcgggatatggagatt
cgtggcgtgggtaatttgctgggtgcggagcaatcggggcagatcaatgtggtcggcttt
gatttgtatatggaaatgctgcaagaggcgatcaacgagattcgcggttctgagatcatc
gaggtagacgatacccaggtcgatctgccgatcacagcgtttatcccggcggactatatg
cccgatgccgatcaaaagatgagtgcataccgagcagtggcggcggtgaactcacggcgg
gaattggcctcgattctggaagaatggcgcgatcgctatggcaatgtgccccaaccggcg
cagcagttgattaaggtgatggagctgaaactggtggccaagaagatcggcttttcgcgg
atccgaccagagcataaacaacatgtggttttggaaaccaaactagaagaaccagcctgg
aagattttgcaacagcgattgccagcgcatttacattcgcggtttgtctatcaaccaggc
aaagtaacggtgcgagggctggcggtgatgccaacggcaaagcagcttgatagtttgatt
gagtggtttgagttgatgcaggctacaaaaacggttgaaatagttgcagttaatagttag
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