Pseudoclavibacter triregionum: USB125703_01269
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Entry
USB125703_01269 CDS
T07344
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psev
Pseudoclavibacter triregionum
Brite
KEGG Orthology (KO) [BR:
psev00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psev03019
]
USB125703_01269
Enzymes [BR:
psev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
USB125703_01269
Messenger RNA biogenesis [BR:
psev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
USB125703_01269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_30
PhoH
SLFN-g3_helicase
ResIII
TsaE
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAG7845014
LinkDB
All DBs
Position
1:complement(1417790..1422058)
Genome browser
AA seq
1422 aa
AA seq
DB search
MSSQDDRPARDERAPRDRAERPAPGRRADGADRGPRRADRAPRERRLTLRERRGPLPPLP
PISFPEDLPVSQLREEIADAIREHQVVIVAGETGSGKTTQLPKICLELGREMIGHTQPRR
IAARTIAERIASELGSELGGLVGYQVRFTDEVSDETRVKLMTDGILLNEIHRDRELRAYD
TIIIDEAHERSLNIDFLLGYLKRLLPKRPDLKVIITSATIDPESFARHFATPRTPGGEPE
PAPIIEVSGRTFPVEIRYRPLVPDAITPGPNDGDVDDDAPQRTPERDLFEGICDALDELE
REEPGDVLVFLPGEQEIRDAQDAIRGHLQRSRMPEATEVLPLFGRLSAADQHRVFETSRR
PGVRRRVVLATNVAETSLTVPGIAYVIDAGTARISRYSTKAKVQRLPIEAVSQASANQRS
GRSGRTRPGIAIRLYSEADFERRPAFTDPEILRTNLASVILQALELGLGGIDRFPFLQAP
DPRGVKDGLDLLRELGAIEEGPAPAKGRRGGAKDGEADGAGNGHEPRARRHPAPGPRLTR
IGRELSRLPIDPRYGRMVVESKRHDVSRDVLIIVAGLAVQDIRERPLEQRQKADSLHARF
TDPTSDFLTLLNLWRYLEAKSGELGSSAFRRLCRDEFLNFLRFREWQDVFRQLRQMSSSL
GLRVEKPHGDDEPGARADAIHKSVLAGLLSHLGVRDELKREYVGARNQRFLVFPGSGLAK
SGADAIMAAELVETSRLFARTVAKIDPAWAEELAGPLAKRRHSDPHWERKLGQAVAIEQV
TLYGVPIVRDRRVQLARFDPRWARDLFIRHALVEGDWTGAHAFDRRNTQLRRELAALEDR
VRRRDVLGDDADAVFEFYDERLPDEVVSQASFEQWWREAQKHQPELLTMRRGDLLEDEAD
AEADADRFPTQWRQGDQRLKLRYRFDPGAADDGVTAQIPLPLLARLDPVGFDWQVPGMRA
ELVTALLRSLPKAIRRSFVPAADWAETLLAAPVPLGKGGGTRPLGEFRPDLGEEPPGPLD
ETLRGVMQTAAGIRFDVEEFEWAKVPAHLRMRFRVLDDRGRELGAGEELLELQSRLKRAA
EASLVRAAREATGLGAGAGSVKGSGVGKGAASAPAAGSGASTRDDASDAVSPDLEQTDVS
TFPVHELPAYVDLRRKSGVIRAYPALRLAKGGRVDLGVVTTAEDQAREHPKALRRLLAKS
VPSPVSYVQEHLTAQEKLLLTASPYPSVQALLEDVVLALAAETLAAAPDPMVRTRAEFER
LRDELNARVVDALFDEAKRLAAILGEWRKAEAALKGANHRSVLPSLSDARAQLDGLIRPG
FVRDAGIARLRHFPRYLKAATHRLERVRENPALERAGLQQIQQAIGLFEEAGGSIPLPDD
APDRLVRARWMLEELRVSLFAQQLGTAETVSVKRLRQALAEG
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagccaggatgaccgccccgcgcgggacgagcgagccccccgcgaccgcgccgag
cgccccgccccaggccgccgcgccgacggcgccgaccgcggaccccgccgcgccgaccgc
gccccccgcgagcgccgcctcaccctccgcgagcgccgcggccctctccccccgctcccg
ccgatctcattccccgaggacctccccgtctcgcagctgcgcgaggagatcgccgacgcc
atccgcgagcaccaggtcgtcatcgtcgcgggcgagaccggctccggcaagacgacccag
ctgccgaagatctgcctcgagctcggccgcgagatgatcggccacacccagcctcgccgc
atcgccgcccgcacgatcgccgagcgcatcgcgtccgagctcggctcggagctcggcggc
ctcgtcggctaccaggtccgcttcaccgacgaggtctccgacgagacccgcgtgaagctc
atgacggacggcatcctcctcaacgagatccaccgcgaccgcgagctgcgcgcctacgac
acgatcatcatcgacgaggcccacgagcgcagcctcaacatcgacttcctcctcggctat
ctcaagcgtctcctgccgaagcgccccgatctcaaggtcatcatcacctcggcgacgatc
gacccagagtcgttcgcccgccacttcgcgacgccccgcacccccggcggcgagcccgag
ccggccccgatcatcgaggtgtccggccgcaccttcccggtcgagatccgctaccgcccg
ctcgtccccgacgccatcacgcccggcccgaacgacggcgacgtggatgacgacgccccg
cagcgcacccccgagcgcgacctcttcgagggcatctgcgacgcgctcgacgagctcgag
cgcgaggagccgggcgacgtgctcgtgttcctcccgggcgagcaggagatccgcgacgcg
caggacgcgatccgcggccacctccagcgctcgcggatgcccgaggcgacggaggtcctc
cccctcttcggccgcctctccgccgccgaccagcaccgcgtcttcgagacgagccgccgt
ccgggcgtccgccgccgcgtcgtgctcgcgacgaacgtcgccgagacgagcctcaccgtg
cccggcatcgcgtacgtcatcgacgccggcacggcccgcatctcccgctactcgacgaag
gcgaaggtgcagcgcctcccgatcgaggcggtctcgcaggcgagcgcgaaccagcgctcc
gggcgctcgggccgcacgcgcccgggcatcgccatccgcctctactcggaggccgacttc
gagcggcgcccggcgttcaccgaccccgagatcctccgcacgaacctcgcgagcgtcatc
ctccaggccctcgagctcgggctcggcggcatcgaccgcttcccgttcctccaggcgccc
gacccgcgcggcgtgaaggacggcctcgacctcctccgcgagctcggcgcgatcgaggag
gggccggcgcccgcgaagggccgccgcggcggggcgaaggacggcgaggccgacggcgcc
ggaaatgggcacgaaccccgcgcccgccgccatcccgcccccggcccccgcctcacgcgc
atcggccgcgagctctcgcgcctcccgatcgacccccgctacggccggatggtcgtcgag
tcgaagcgccacgacgtctcgcgcgacgtcctcatcatcgtcgcggggctcgccgtccag
gacatccgcgagcgcccgctcgagcagcggcagaaggccgactcgctccacgcccgcttc
acagacccgacgagcgacttcctcacgctcctcaacctgtggcgctacctcgaggcgaag
tcgggcgagctcggctcgagcgccttccgccgcctctgccgcgacgagttcctcaacttc
ctccgcttccgtgagtggcaggacgtcttccggcagctgcgccagatgtcgagctcgctg
ggcctgcgcgtcgagaagccgcacggcgacgacgagccgggggcgcgggcggacgccatc
cacaagtcggtgctcgcgggcctcctctcgcacctcggcgtgcgcgacgagctcaagcgc
gaatacgtcggcgcgcgcaaccagcgtttcctcgtcttccccggctccggcctcgcgaag
tcgggcgccgacgcgatcatggccgccgagctcgtcgagacgagccgcctcttcgcccgc
accgtcgcgaagatcgacccggcctgggccgaagagctcgcgggcccgctcgcgaagcgc
cgccactcggatccccactgggagcgcaagctcgggcaggccgtcgcgatcgagcaggtg
acgctctacggcgtgccgatcgtccgcgaccggcgcgtgcagctcgcccgcttcgacccg
cgctgggcgagggacctcttcatccgccacgccctcgtcgagggcgactggacgggcgcg
cacgccttcgaccgccggaacacccagctgcgccgcgagctcgccgccctcgaggaccgc
gtgcgccgtcgcgacgtgctcggcgacgatgccgacgccgtcttcgagttctacgacgag
cgcctccccgacgaggtcgtgtcccaggcgtccttcgagcagtggtggcgcgaggcccag
aagcatcagccggagctgctcaccatgcgccgcggcgacctcctcgaggacgaggccgac
gccgaggccgacgcggatcgcttccccacgcagtggcggcagggcgaccagcgcctgaag
ctgcggtaccgcttcgacccgggcgcggccgacgacggcgtgacggcgcagatcccgctg
ccgctgctcgcccgcctcgacccggtcgggttcgactggcaggtgcctggcatgcgcgcc
gagctcgtgacggcgctcctgcggtcgctcccgaaggccatccgccgcagcttcgtgccg
gcggccgactgggccgagacgctcctcgccgcccccgtcccgctcgggaagggcggcggc
acgcgcccgctcggcgagttccggccggatctcggcgaagagcccccggggccgctcgac
gagacgctccgcggcgtcatgcagacggcggcgggcatccgcttcgacgtcgaggagttc
gagtgggcgaaggtgccggcgcatctgcgcatgcgatttcgggtgctggatgaccggggc
cgcgagctcggcgcgggcgaggagctcctcgagctgcagtcgcggctcaagcgcgcggcg
gaggcgtcgctcgtacgggcggcgcgcgaggcgacggggctcggagccggcgcgggctcg
gtcaaggggtccggcgtcggcaagggcgcggcctcggcccccgccgcgggctccggcgca
tccacgcgcgacgatgcctccgacgccgtctcccccgacctcgagcagaccgacgtctcg
accttccccgtccacgagctccccgcctacgtcgacctgcggaggaagtcgggcgtcatc
cgcgcctacccggcgctgcgcctcgcgaagggcggccgcgtcgacctcggcgtcgtgacg
accgcggaggaccaggcccgcgagcacccgaaggcgctgcggcgcctcctcgcgaagtcc
gtcccctcccccgtgagctacgtgcaggagcacctcacagcgcaggagaagctcctcctc
accgcgagcccgtacccgagcgttcaggcgctcctcgaggacgtcgtcctcgccctcgcc
gccgagacgctcgcggccgcgcccgacccgatggtgcgcacgcgcgccgagttcgagcgg
ctccgcgacgagctcaacgcccgcgtcgtcgacgcgctcttcgacgaggcgaagcggctc
gcggcgatcctcggcgagtggcggaaggccgaggccgcgctcaagggcgcgaaccaccgc
agcgtcctcccctcgctctccgacgcgcgcgcccagctcgacgggctcatccgccccggc
ttcgtgcgcgacgcgggcatcgctcggctgcgccacttcccgcgctacctcaaggcggcg
acgcaccgcctcgagcgcgtgcgcgagaacccggcgctcgagcgcgcgggcctgcagcag
atccagcaggcgatcggcctcttcgaggaggcgggcgggtcgatcccgctgcccgacgat
gcgccggatcgcctcgtccgcgcccgctggatgctcgaggagctccgcgtctcgctcttc
gcccagcagctcggcacggcggagaccgtctcggtgaagcgcctccgccaggcgctcgcg
gagggctga
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