Polypterus senegalus (gray bichir): 120524073
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Entry
120524073 CDS
T08668
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120524073 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psex03400
]
120524073 (lig4)
Enzymes [BR:
psex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120524073 (lig4)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120524073 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
120524073
NCBI-ProteinID:
XP_039601860
LinkDB
All DBs
Position
2:313213825..313225004
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AA seq
903 aa
AA seq
DB search
MATTMPSVASQVPFAHLCSTLEKIQKTKTRPEKAKHLKDFLDSWRKFHSALHKNDPNTTD
SFYPAMRLILPQLERERMAYGIKENMLAKLYIDVLCLSKDGEDANKLLNYRAPSTSQGEA
GDFAVVAYFVLKKRCTNQGCLSIQEVNNFLDSVASNNAAKRKDLVRKSLQDLITKTSALE
QKWLIRMILKDMKLGYSKETVLNIFHPDAVELHNVTTDLEKVCRQLHDPKVCLSDVSIAL
FCAFKPMLAAIADIHQIEKQMNNLPFYIQTKLDGERMQLHKDGDVYKYYSRNGYDYTQQF
GASPLEGSLTPFIHNVFKSNIVNCILDGEMMAYNPTTETFMQKGSKFDIKRMVEDSELQT
CFCVFDVLLVNDQKLGHEVLRKRHEILDSVFAPVQGRIHIVPKMEARTKQEVVNFLNEAI
DNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGLRGGMMSH
FLCAVAETPPPGEKPKVFHSLCRIGSGYTMKELYDLGLKLANHWKPYRKKDPPISILCAS
ERPEAYIEPCHSVIVQVKAAEIVDSDMYKTGCTLRFPRIEKIRNDKEWYECMTVKDLAHF
HSKASGKLASRHVKLNEDEPDKKKRKVAKTKKVIDVIDHFKSQDLSNISRVSNIFEDVEF
CIMSGNSEHSKAELEKAVAQYGGIVVQNPGKDTYCIIAGIENMRVKNVIASKDFDVVQVE
WLLECINAEKCVPWQPCHMIHMSPSTKQHFAKEYDCYGDSYLVDTDEDQLKEVFKRIKKT
EEKMSLEATADLEQRYGWVDRPNSLFRQCRVYLDQYAEIGNRGSQIHGSSLKIRALELRF
HGAEVLSELLEGVSHVIVKDEARIQELKGIRRAFEKKFKIVLESWVTESINAGYLMNEND
YLV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggctacaacgatgccttccgttgcttctcaggttccctttgcacatttgtgttcaacg
ttagaaaaaatacaaaagacaaagactcggcccgagaaagcaaaacatttgaaggatttt
ttggactcctggagaaagtttcacagcgcgcttcataaaaatgaccccaacacgacagat
tcgttctatcctgcaatgcgcctgatcctcccccagctggagcgagagagaatggcatat
gggataaaggaaaacatgctcgccaagctgtatatcgacgttttatgtttgtcaaaagat
ggtgaggatgcaaacaagcttctcaactaccgagctcctagcacctcccagggagaggca
ggggattttgccgttgtggcttattttgtcctaaagaagcgatgcacaaatcaggggtgt
ctttccatccaggaagtcaataacttcctggattcggtggccagcaataatgctgctaaa
aggaaagacttggtgaggaagagtctacaggacttgataacaaaaacctcggctttggag
caaaaatggctgattcgcatgatcctgaaagacatgaaactgggctacagcaaagaaacc
gtgctgaacatttttcatccagacgctgtggaactccacaacgttaccacagatctggaa
aaggtatgccggcaacttcacgacccaaaagtttgcctgtcggacgtttccattgctttg
ttttgtgcctttaagcccatgttggccgcgatcgcagacatccatcagattgaaaagcaa
atgaacaacctgcccttctatattcagacaaaattagatggagagcgcatgcagttgcac
aaagatggagacgtgtacaagtattactctcgcaacgggtatgactatacccagcagttt
ggtgcgtcacctttagagggatccttaactccatttattcacaatgttttcaaaagcaat
attgtaaactgcatactggatggggagatgatggcttacaaccctaccaccgagaccttc
atgcagaaaggcagcaagtttgacattaaacgcatggtggaggattctgaattgcagact
tgcttctgtgtatttgatgtgctgctggtcaatgaccagaaactcgggcacgaggtgctt
cgtaaaagacacgagattctcgatagtgtctttgctcccgtgcagggcaggattcacatt
gtccccaaaatggaggcaaggacgaaacaggaagtggtgaattttctgaatgaagcaatt
gacaacagggaggaaggaatcatggtaaaggatcccatgtctatttacaagccggataaa
cgtggggagggttggttaaagataaagccagaatacgtagacggtctcatggatgaactg
gacatcctaatcgttgggggttattggggaaagggactacggggtggaatgatgtcccat
tttttatgcgcagttgctgaaactccaccgccaggagaaaagcccaaagtcttccactcg
ctgtgcagaattggatcggggtatacaatgaaggagttgtacgacctcggcctaaagctg
gcgaatcactggaagccgtatcgcaaaaaagatcctccaatttctattttgtgtgcttct
gaaagaccagaggcatacatcgaaccgtgtcattcggtgattgtccaggtcaaggctgcg
gaaattgttgacagcgacatgtacaaaaccggatgcacgcttcgctttccaagaattgaa
aaaatacgcaacgacaaggagtggtatgagtgtatgaccgtgaaagatctggcccatttt
cactcgaaagcttccggaaagctagcctcccgacatgtgaaactgaatgaggatgagcca
gataagaagaaaaggaaagttgccaaaacgaagaaggtcatcgatgtcatcgatcacttc
aaatcccaagacctttcaaatatcagcagagtttccaatatatttgaggacgtggagttc
tgtatcatgagtggcaactcagaacattcaaaggcagagcttgaaaaggccgttgcccag
tatggcggtattgtggttcagaacccagggaaggatacatactgcatcatcgctggtatc
gagaacatgagagtcaaaaatgttatcgcttcaaaggactttgacgttgtccaagtcgag
tggctgttagaatgcataaatgcagaaaaatgtgtcccgtggcagccctgtcacatgatt
cacatgtccccttccaccaagcagcactttgctaaggaatatgattgctacggtgatagc
tatcttgtagacactgatgaagatcagctgaaggaggtgtttaaacgtataaagaagact
gaggagaagatgtcgttggaagccacagctgatctggagcagaggtacggctgggtggat
cgacccaacagcctgtttcggcagtgcagagtttatctggaccagtatgctgaaattggg
aaccgaggaagtcaaattcacggatccagcttgaaaataagagctttggaactccgattt
catggtgcagaagtgctgtccgagctcttggaaggagtttcacatgtaatcgtcaaagat
gaagctcgcatccaggagctgaaaggcatcaggcgagcgtttgaaaagaagtttaagatt
gttctggaatcatgggtaactgagtctatcaatgcaggctatctgatgaatgagaatgat
taccttgtataa
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