Polypterus senegalus (gray bichir): 120528507
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Entry
120528507 CDS
T08668
Name
(RefSeq) tripartite motif-containing protein 16-like isoform X1
KO
K12006
tripartite motif-containing protein 16
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120528507
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120528507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
Fib_alpha
zf-RING_6
Baculo_IE-1
U-box
LMBR1
zf-Nse
FUT8_N_cat
Vit_open_b-sht
DUF5930
Exonuc_VII_L
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
120528507
NCBI-ProteinID:
XP_039608617
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Position
4:253693757..253721148
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AA seq
558 aa
AA seq
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MAEAQLFVSQDEFTCSVCLDTLTDPVSLHCGHSFCLKCLTDCWDQSQVCSCPQCRHTFTT
RPELNRNTLLNEVIKKLKKTALSPPLSQNYAGSGDVECDFCTGKKFRAVKSCLTCLASFC
PTHLQPHLEGDALKHHKLVDPDGNLKEKLCEKHQKSLEMFCITDDSFICMMCAVTGHKNH
EMLELEAEREEKQKHLGVTLSEIRRRLEKREKKLKETRRVVEQMKISVKREVEENEKSFT
TLIRRIEEAHRKMTERIREQEKRETEKAEGVIEQLEKEIEELRRRDAQLKELSETKDHLH
FLQTFSSRCVLPADGDSLSFTVTADFSSEDLRKELSGLTKTVEKISQWDIMTRTPSGCKA
QNFTLHPAEPQSREEFLQYFCPLTLDINTAHKRLRLSEGNKKVTCERTKAEYPDHPDRFD
YWGQVLCREALTGTRCYWEVECSGDFMRIGVAYKGLSRKGDGVECGIGYNDKSWSLVCSH
SQYSVWYNMKRTLISAPYSPRIGVYLDWPAGSLSFYSVSHTMTLLHRFNTSFTEPLYPGF
SVDPHCSVTISHLTPCDH
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggcccagctgtttgtgtcacaggacgagttcacctgctcggtgtgtctggac
accctgactgacccagtgtcactgcattgtggtcacagtttctgtctgaagtgcctcaca
gactgctgggatcagagccaagtgtgcagctgtcctcagtgcagacacaccttcaccaca
aggcctgagctgaacagaaacactctgctgaatgaagtcatcaagaaattaaagaagacg
gcactcagtcctcctttgtctcagaattatgctggttctggagacgtggagtgtgacttc
tgtactgggaagaagttcagagcggtgaagtcctgtctcacctgcttggcctctttctgt
ccgactcacctgcaacctcaccttgaaggagacgccctgaagcaccacaagctggttgat
cctgatggaaatctgaaggagaaactctgtgagaaacatcagaaaagtctggagatgttt
tgcataactgatgattcctttatctgcatgatgtgtgctgtgactggacataaaaatcat
gaaatgctcgagctggaggctgaaagagaagaaaaacagaaacatctgggagtgacgctg
agtgaaatcaggaggagacttgagaagagagagaagaaactgaaggagacgaggagggta
gtggagcagatgaagatttcagtgaaaagagaggtagaggaaaacgagaagagcttcact
actctgatacggcgcattgaggaagcccacagaaaaatgactgagaggatcagagaacaa
gaaaagagagaaacggagaaggctgaaggagtcattgagcaactagagaaggagattgag
gagctgaggaggagagatgctcagctgaaggagctttcagagaccaaggaccatctccac
ttcctacagactttctcatctcgctgtgtccttcctgctgatggagactcactgagtttc
actgtcactgctgatttctcatctgaggacctgagaaaggagctgtcaggtctgacaaag
actgtggagaagatcagccagtgggacatcatgacaaggactccatcaggttgtaaagct
caaaatttcaccctacaccctgctgaacctcagagcagagaggagttcttgcaatacttc
tgtcccctcacactggacatcaacacggcacacaaacgccttcgtctatctgaagggaac
aagaaggtgacatgtgagaggacaaaagccgaatatcctgatcatcctgacagatttgac
tactggggtcaagttctgtgcagagaggctctgactgggactcgctgttactgggaggtg
gagtgcagtggagacttcatgaggattggagtcgcatataaaggactgagcaggaaagga
gatggcgtggagtgtggcattggatacaacgacaagtcctggagtttggtgtgttctcat
tcccagtactccgtgtggtacaatatgaagaggactctaatcagcgccccctacagcccc
agaataggtgtgtatctggactggcctgctggctctctgtcattttatagcgtctcacac
acaatgaccctcctgcacaggttcaacacctccttcactgagcccctctatccagggttt
agtgttgatcctcactgcagtgtaacaatcagccatctgacaccatgtgaccactga
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