Polypterus senegalus (gray bichir): 120530312
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Entry
120530312 CDS
T08668
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120530312 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
120530312 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120530312 (thoc1)
03041 Spliceosome [BR:
psex03041
]
120530312 (thoc1)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120530312 (thoc1)
Spliceosome [BR:
psex03041
]
Complex C
Other components
EJC/TREX
120530312 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120530312 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
120530312
NCBI-ProteinID:
XP_039610650
LinkDB
All DBs
Position
5:64216135..64278825
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AA seq
665 aa
AA seq
DB search
MHCFSALFRLPKGTMSPASFNFSDAKDRFMSATRAALENKNNKALINVFAHLPGSETEKK
TTLDQAFRSVLEEEIVKQTASCEDFLGLIYRSIDGVTEGICSATTPFLLLGDVLDCLPLD
QCDKIFTFVEENVSTWKSNSFYAAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLF
PLSEKSGLNLQSQFNLDNITVFNKNEQDSTLGQKHIEEKDDNMEEGEMGDDETPTTSSIP
IDYNLYRKFWTLQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSYKLDDTQASRKKLEEL
KTAGGEHIYFAKFLTSEKLMDLQLSDSNFRRHILVQYLILFQYLKGQVKFKSSSCVLTDE
QSLWMEDTTKLVYQLLKEIPPDGDKFAAVVEHILNTEENWNAWKNEGCPSFVKERPVETK
PIRPARKRPAPEDFLSKGPDRKVLMGNSEELTRLWNLNNDNMEACKSESREFMPSLEEFF
EEAIEQADPANMVEEKYKVVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVI
KLAKELPPPSEEIKTGEEDEDNDDTLLKENNESPDVQHHKSVTGQQIEAVANKLGDQWKV
LARHMELKDVDIREIESDSDDVNMRAKLLLVLWQDREGNQATVGNLGLALNSAGFAEIAE
SLNDT
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcattgcttttctgctttgtttcgtttaccaaaaggaacgatgtcgccagcttcattt
aactttagcgatgccaaagacagatttatgagtgcaacccgagctgcgctggaaaataag
aacaacaaagctttaataaacgtctttgcccatctccctggaagcgaaacggaaaagaaa
acaaccctagaccaagcattccgaagtgttcttgaagaggaaattgtaaagcagactgct
agttgtgaagatttcttgggtcttatctacagaagtattgatggagtgactgaaggtatt
tgttcagccacaacacctttcttgcttcttggagatgttctggactgtcttcctttggat
cagtgtgataagatctttacatttgttgaggaaaatgtttcaacatggaaatctaattca
ttttatgcagcaggaaaaaattaccttttacgaatgtgcaatgatcttcttagaagacta
tcaaaatcccaaaatactgtgttctgtggcaggattcagttgtttctcgccagattattt
ccactctctgagaaatcaggccttaacttgcagagtcaatttaaccttgacaatatcact
gtttttaataaaaatgaacaagacagtactttgggtcaaaaacacattgaggaaaaagat
gacaatatggaggaaggtgagatgggagatgacgaaacacctacaaccagttcaatacca
atagactataacctatacagaaagttttggacgttgcaggactatttcaggaatcctgtg
cagtgctatgacaaattctcctggatgacatttcttaagtactctgatgagaccctggct
gtgtttaaaagctataaattggatgatactcaggcatccagaaaaaagttagaggaatta
aaaactgcaggaggggaacatatttattttgccaaattcctaactagtgaaaagttaatg
gatctacagctaagtgacagcaatttcagacggcatatactagttcagtaccttattcta
ttccagtatctaaaggggcaagttaaattcaaaagttcaagctgtgttctgacggatgag
caatcgctatggatggaagacacaacaaaacttgtctaccagctacttaaggagattcct
ccagatggtgataaatttgcagctgtagtagagcacatattaaacacagaagagaactgg
aatgcatggaaaaatgaaggttgcccaagctttgtaaaagaaaggcctgtagaaaccaaa
ccaattcgacctgcacgaaaacgccctgcaccagaggacttcttaagcaaaggtcctgat
aggaaagttttgatggggaacagtgaagagttgactcggttgtggaatcttaataatgat
aacatggaagcatgcaaatcagaatccagagagtttatgccaagtttagaagaattcttt
gaggaagctattgaacaggctgatccagcgaacatggttgaagagaaatacaaggttgta
aataattcaaactatggttggagagctttgaggcttctggcacgtagaagtcctcatttt
ttccagcctactaatcagcagttcaaaagccttcctgaatacttggagaacatggtcatc
aagctagcaaaagagttacctcctccatctgaagagataaagactggtgaagaggatgag
gacaatgatgataccctgcttaaagagaacaatgagagtccggatgtgcaacatcacaag
tcagtgacgggccagcagattgaggctgtagccaacaaactaggagatcagtggaaggtt
ctggcacgtcatatggagctgaaggatgtggacatccgagagattgaatctgacagcgat
gatgtgaacatgcgtgccaaactgttactggtgttgtggcaggatcgagaaggaaatcag
gccacggtaggaaatttgggtttggctctgaacagcgctggctttgctgagattgcagag
agcctcaatgacacataa
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