Polypterus senegalus (gray bichir): 120530990
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Entry
120530990 CDS
T08668
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04140
Autophagy - animal
psex04148
Efferocytosis
psex05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120530990 (vps16)
04148 Efferocytosis
120530990 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120530990 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120530990 (vps16)
Membrane trafficking [BR:
psex04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120530990 (vps16)
Hops complex
120530990 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF3519
DUF6809
Motif
Other DBs
NCBI-GeneID:
120530990
NCBI-ProteinID:
XP_039611805
LinkDB
All DBs
Position
6:38277549..38378443
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AA seq
836 aa
AA seq
DB search
MVFMTANWHPLGDAFYRKTDLYEMGWNIGGLRDCLIAAAPYGGPIALLKGSQRSERSHSV
RPVMEMYTSSGVPLASFLWKSGIVVDIGWTVSDYLLCIQEDGTVLIYDILGNYCRHFNMG
SELSQNSVTEAKIFHSAYRTGVAILTKAYRFSVVTNIEDQKIWRLPDVPGLQTSGLSCWT
VISQDRQTKLVLASGRNIYVLDSDSCTSVTVPGLDPDISSYLHMSASFNYKYLALYTNTG
CIWMGTSNLKEKLGEFDCKFHAPPKQMVWCRRPRSQQPSVVLMWDSLLLVAGKSNESIQY
NLDDELYLVPELDGVRIIGSKSHEFLHEVPATCEEIFKIASMAPGALLLEAHKEYKKESQ
KADEYLREIKDQNLLPTAVEQCIEAAGFEYEPETQKMLLRAASFGKSFLSNFSPERFVTM
CRELRVLNAVRDYTVGMPLTYVQFRQLTVQVLIDRLVFRRLYPLAIEICKHLKIREFQGV
SHVLKHWACFKVQQKEPDEDIAHAINQKLGDTAGISYSEIAAKAYECGRPELAIMLLDFE
PQSGEQVPLLLKMKRGQLALNKAIESGDTDLVYTVVMYLKNEMNRRDFFLTLRKHPVALS
LYRQFCKHQEQDTLKDLYNQEDDHQELANFYVQESYQEAKVEVRVAELQKAVDEYSKARN
EFAAKATEEQIKLLKFQRKLQDETDKPYVDRSLHDTVYSLLLEGSHRHAEQLYKDFKIPD
KRYWWLKISALAEKNDWEELEKFSKSKKSPIGYLAFVEVCVKHQNKYEAKKYVSKVTPEL
KVKAHLLVGEVEQAADIAIERKNENDLNLVLSRCNQSTDRSLVERLNKARSGANKK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcatgacagcgaactggcaccccttaggggatgcgttttacaggaaaacagat
ttatatgaaatggggtggaacattggaggactaagggactgccttattgctgcagcacca
tatggtgggccaatagctttgctaaaaggatcccagcgaagtgaacgttcacatagcgtc
agaccagtcatggaaatgtatacttcatctggtgtgcctcttgcaagctttctgtggaaa
agtggcattgtagtagacatcggctggacagtttctgattatttactgtgtattcaagaa
gatggcactgtattgatttatgacatacttggaaattactgcagacacttcaacatgggc
agtgaattatcccaaaactcagtgactgaagccaaaatattccactctgcttatcgaaca
ggagttgcaatactgactaaagcatacagattttctgtggtaactaatattgaagaccag
aaaatatggcgcttaccagatgtaccaggactacaaacttctggattatcttgctggaca
gtaatatcacaggatagacagactaaactggttttggcaagtggaagaaatatatatgtt
ttggacagtgattcatgcacatctgtgactgtcccggggcttgacccagatataagcagc
tatttgcacatgtcagcttctttcaactacaagtacttggcactttacactaatacagga
tgcatttggatgggaacctcaaacctaaaggagaagcttggggaatttgactgcaagttt
catgcaccaccaaaacagatggtatggtgtcgcagaccaaggagtcagcagccatctgta
gttctcatgtgggatagtcttctcttggtagcaggaaagagcaatgaaagcattcaatat
aacttagatgatgagttgtatcttgtaccagaacttgatggggtacgaataatcggtagc
aagagtcatgaatttttgcatgaagttccagcaacctgtgaggagatttttaagattgca
tctatggcacctggagctctcttgttagaagctcataaggaatataagaaagaaagtcaa
aaggcagatgagtatctgcgagaaatcaaagaccagaatcttcttcctactgctgttgag
cagtgtattgaagcagcaggatttgaatatgaaccagagactcaaaagatgcttctccga
gcagcatcatttggaaaatctttcctcagtaacttttccccagagaggtttgtaaccatg
tgtcgtgaactgagagtcctaaatgcagttcgagactatactgttggaatgcctctcact
tatgttcagttcagacaattaacagtccaggttctaatagatcggctggtgtttcgtaga
ttataccctcttgccattgaaatctgtaagcatttgaagattcgtgaattccagggtgtg
agtcatgtgctaaaacactgggcttgctttaaggttcagcagaaggaacctgatgaggac
attgctcatgccatcaaccagaaacttggggatacagcaggaatttcatattcagagatt
gccgccaaggcttatgaatgtggacgccctgaacttgccatcatgcttcttgattttgag
ccacaatctggggaacaggttcctttgttactgaaaatgaagagaggtcagctggctttg
aacaaagctattgaaagtggagacactgaccttgtttacacagttgtgatgtatctgaag
aatgaaatgaaccgcagagatttctttcttactctacgcaaacatccagttgcacttagc
ttgtatagacagttttgcaaacaccaagagcaggacacgcttaaagacctctataatcag
gaagatgaccatcaagagctggccaacttttatgtgcaagagagctaccaggaagcaaag
gttgaagttcgtgtagcggaattgcagaaagctgtggatgagtacagtaaagcaaggaat
gagtttgcagccaaggccacagaagaacaaattaagctgttaaagtttcagcgcaaactc
caagatgagactgacaagccttatgtagatcgttctctccacgacactgtgtacagtctt
ctgctagaaggcagtcacaggcatgctgagcagctttataaagatttcaaaattccagac
aaaaggtactggtggttgaagatctctgctctcgctgagaaaaatgattgggaggagtta
gaaaaattctccaagagtaaaaagtctcccattggttacctggcttttgtggaagtctgt
gtaaagcaccaaaacaaatatgaagctaagaaatatgtgtccaaggtgactcctgaactg
aaagttaaggcccacctattagttggggaagtggagcaagcagcagatatcgcaattgaa
agaaagaatgagaacgacttaaacctggttctgtcccgctgcaaccaaagcactgaccgg
tccttagtggaacgccttaacaaagcacggtcaggtgccaacaagaagtaa
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