Polypterus senegalus (gray bichir): 120536992
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Entry
120536992 CDS
T08668
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120536992
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120536992
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
Prok-RING_4
U-box
SbcD_C
zf-UBP_var
Y1_Tnp
FliD_N
CHDCT2
Motif
Other DBs
NCBI-GeneID:
120536992
NCBI-ProteinID:
XP_039621513
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Position
10:complement(29139008..29164480)
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AA seq
553 aa
AA seq
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MMAEAGLLVLQDQFICSVCLDTMRDPASVPCGHNFCMKCITNYWDRTGESGCPQCREIFT
PRPVLRKNTLLSEVIEQFKTTGLGLPSSENYPVESECDFCTEKKSRAVKSCLTCLVSFCE
KHIQPHYEKALLKNHKLVDPAVNLQQKLCTKHEKPMDLFCRDDQTCICYVCFATEHRSHD
ATTPETERAEKQNDVDTKLCEVREGILERSLKIQEMKESLGSIKLSADQEALEVENSFAS
LIHCIEDTRSNVMDRIRELEKMEITKTEEVMEQLEREIEELKSRDAELTRLSETNDHIHF
LQTFPFISVLTENEDSLQVTVTKDFSTEDLRKQVSQLTENLLKISQWNFSKITKTTPVYV
MVPPEPQKREDFLKYSCSLTLDPRTANRHLHLFSGNRKATWKSRTLLHLHHPERFDCYSQ
VLCREGFFNTRCYWEVEWSRTVTIAVSYKSIRRKGKEDECRLGYNDKSWGLSCSSTFYRA
LHSNWECRISAPRCSRIGVYLDCVSGCLSFYSISETMNLLHKFQTNFTEPVYPGFRVHKG
DSESKCDSSITIC
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagaagcaggcttattagtactgcaggaccagtttatttgctccgtgtgcctt
gacaccatgagggatcccgcttcggttccatgcggccataacttttgcatgaagtgcatt
acaaactactgggatcggacaggcgagagcggctgcccacagtgccgtgagatattcact
ccgaggccggtgttgcgcaagaacaccctgctatcggaagttatcgagcagtttaaaaca
acaggactcggtttaccaagcagtgaaaattacccagtagaatcagagtgtgatttctgt
accgagaagaagtcccgagcagtgaagtcttgtctcacgtgcctggtgtccttctgtgag
aagcacatccaaccccattatgaaaaagccctcttgaaaaatcacaagctggtcgacccg
gctgtaaatctgcagcagaaactgtgcacaaaacacgaaaaaccaatggacttgttttgt
agagacgatcagacttgcatctgttatgtctgttttgcaacagagcacaggagtcacgat
gcgaccacccctgagacagaaagagcggagaaacagaatgatgtggatacaaagctatgt
gaagttcgagaaggaatcctggagaggtcactcaaaattcaagaaatgaaagaatcctta
ggttcgattaagttgtctgctgatcaagaagcacttgaggtcgagaacagctttgccagc
ctgatccactgcattgaagacacccgcagcaatgtgatggaccgcattagagagcttgaa
aagatggagattactaagactgaagaagtcatggagcagctagaaagggagattgaagag
ctaaagagcagagatgctgaactgaccagactctctgagacaaatgaccacatccacttc
ctccagactttcccgtttatcagtgttctgactgaaaatgaagattcgctccaagttact
gtcacaaaagacttctccactgaggacctgcggaagcaagtgtcccagctgacagaaaat
cttttaaaaatcagtcagtggaatttctcaaaaattactaaaacaacccctgtttatgtt
atggtgcctccagagccacagaaacgagaagacttcttaaaatattcttgctcgctcacc
ttagacccgagaacagcaaacagacaccttcatctgttttctggaaacagaaaagcaaca
tggaaaagtcggactctgttgcatcttcaccatcctgagagatttgactgttactctcaa
gtcctttgcagagagggtttctttaatactcgctgttactgggaagtggaatggagcagg
acagtaaccatagcggtctcttacaaaagcatccgaaggaaaggaaaggaggacgagtgt
cgactggggtataacgacaagtcgtggggcttatcctgctccagtaccttctaccgtgct
cttcacagtaactgggagtgtaggatctctgcacctcgctgctccaggattggtgtatat
ctggactgtgtcagtggctgcctctcattttatagtatctccgagacaatgaacctcctg
cacaaattccagaccaacttcactgagcctgtctatccaggctttcgagttcataaaggg
gattctgaatcaaagtgtgattctagtataacaatctgttag
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