Polypterus senegalus (gray bichir): 120537556
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Entry
120537556 CDS
T08668
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120537556 (upf1)
03015 mRNA surveillance pathway
120537556 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120537556 (upf1)
Enzymes [BR:
psex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120537556 (upf1)
5.6.2.5 RNA 5'-3' helicase
120537556 (upf1)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120537556 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120537556 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120537556
NCBI-ProteinID:
XP_039622518
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All DBs
Position
10:complement(127679480..127722761)
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGVLQNGSVDDGVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGARFMSTAMYDAREALIPGSVYDRSSQGRPSNMYFQTHDQIGMIGAGPSHVAAM
NIPIPFNLMMPPMPPPGYFGPANGPAVGRGAMKGKAGRGGRQSRRGLGNQGAGQSNLPNS
QASQDVASQPFSQAPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcatacgggccgagctcgcagaccctcactttcttggatacggaagaa
gcggagctacttggcgccgacacccagggctcggagttcgaattcacggacttcacgttg
cccagccagacacagacacaaggccaaactcagagtcagctcgacggccaggtaaatggc
ccagatggtgtgctgcagaatggttcagtggatgatggtgtggccaaagctagtcagtta
cttgctgagctgaattttgaggaagatgaagaggacacctactatactaaggatctccca
gtgcatgcctgcagctactgtggcatccatgacccagcttgtgtcgtatactgcaacacc
agtaagaaatggttttgtaatgggcgtggtaatacatcaggaagccacattgtgaatcat
cttgtgcgagcaaagtgtaaggaggtgactctacataaagatggaccactgggagagact
gtacttgagtgctacaattgtggttgccgcaatgtttttttgctaggtttcatccctgcc
aaggctgactctgtagttgttctgctgtgcaggcaaccctgcgctagtcagagcagctta
aaagatattaactgggacagctcgcagtggcagcccttgatccaggaccggtgctttctt
tcatggttggtcaagatcccatctgagcaagagcaattgagggctcggcagatcactgcc
caacagattaataagctggaagagttgtggaaggagaacccatctgccactctagaagac
ctagagaagcctggagtggatgaggaaccacagcatgttttactgcgttatgaagatgcc
tatcagtatcaaaatattttcgggccattggtgaagcttgaggcagattatgataaaaag
ctcaaggagtctcagacgcaggataacattactgtacgatgggatctgggactgaacaag
aaaagaattgcttacttcacattgcccaaaactgattcagatatgcgtctcatgcagggt
gatgagatctgtctacgctataaaggagacctggctccactgtggaaagggattggacat
gtcatcaaagttccagacaattatggggatgagattgcaattgaactgaggagcagtgtc
ggtgcacctgttgaagtgccacataatttccaggttgactttgtgtggaaatcgacatct
ttcgatagaatgcagagtgctctgaagacatttgctgtagatgagacatcagtgtcaggg
tatatttaccataaattgctgggacatgaagtggaggacgtcatcatcaagtgtcagttg
ccaaagcgcttcaccgcacagggcttaccagacctcaatcactctcaggtttatgctgtc
aagacagtcctgcagagacccctcagtctcatccaaggacctcctggaactggcaagact
gtcacatcagccaccatagtctatcatctggcacgacaaggcaatgggccagttctggtg
tgtgcaccaagcaacattgctgtggatcagctaactgagaagattcatcaaaccgggctt
aaggttgtacgtctttgtgccaagagccgcgaggccattgactctcctgtgtccttcctg
gccctgcacaaccaaatccgtaatatggatagcatgccagagcttcagaaactgcaacag
cttaaggatgaaacaggtgagctgtcatcggcagatgagaagcgctaccgagccctgaag
cgtacagcagagagagagctacttatgaatgctgatgtaatctgctgtacctgtgttggt
gctggggacccccgcctagcaaagatgcagtttcgttctattcttatcgatgagagtaca
caagcaacagaaccagagtgcatggtgcctgttgtacttggggccaaacagcttatcctt
gtgggtgaccattgtcagctgggacctgttgtaatgtgcaaaaaggcagccaaggctggc
ttatcgcagtccttatttgagcgcctagttgtccttggcattcgtcctattcgccttcag
gtgcaataccgtatgcatcctgcccttagcgcctttccctccaacatattctatgaaggt
tcactgcaaaatggagtcacagcagctgaccgtgtcaagaagggctttgattttcagtgg
ccacagccagacaagcctatgttcttttatgtcacccagggtcaggaggagattgcaagc
tcaggaacatcatacttgaacaggactgaggctgctaatgtagaaaagataaccacgaag
cttctaaaggctggagccaagcctgaccaaattggtatcattacaccctatgaaggccag
cgctcctatctggtgcagtacatgcaatttagtggctccttgcacacaaagctctatcag
gaggtagagattgctagtgttgatgcctttcagggtcgagaaaaggattttataattttg
tcttgtgtccgagcaaatgaacatcaaggcattggatttttaaatgaccctagacgacta
aatgtagcccttaccagggcaaggtatggtgtgataattgtaggcaaccctaaagctcta
tctaagcaaccgctgtggaaccaccttttgaactattacaaggaacagaaggtgctggtg
gaaggtcccctaaacaatcttcgtgagagcctcatgcagttcagcaaaccccgcaaactt
gttaacactatcaaccctggggcacgatttatgagcactgccatgtatgatgccagagaa
gcacttatcccaggatcagtttatgacagaagtagccaggggcgtccttcaaacatgtat
tttcaaacacatgatcagattggaatgattggagctggacccagccatgttgcagcaatg
aacatccccattccattcaatctgatgatgccaccaatgcctccacctgggtactttggg
ccagctaatggtccagcagtaggaagaggtgctatgaaggggaaggctggccgtggagga
cggcagagtcgccgtggacttgggaatcagggtgctggtcagtccaacctgcctaacagt
caggctagccaggatgttgcttcacaacctttctcacaggctcctctgacccagggatac
atctcaatgagccagccctcacaaatgagccagccagggctgtcccaacctgagctgtca
caggacagttacctgggtgatgaattcaagtcccagattgatgtggctttgtcacaggac
tcgacttatcagggtgaacgagcataccaacatggcggggtgaccggactgtcacagtac
tag
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integrated database retrieval system
