Pseudarthrobacter psychrotolerans: GU243_22790
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Entry
GU243_22790 CDS
T06403
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psey
Pseudarthrobacter psychrotolerans
Pathway
psey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GU243_22790 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psey03400
]
GU243_22790 (mfd)
Enzymes [BR:
psey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GU243_22790 (mfd)
DNA repair and recombination proteins [BR:
psey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GU243_22790 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QHK22019
UniProt:
A0A6P1NQK5
LinkDB
All DBs
Position
contig_1:4841977..4845669
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AA seq
1230 aa
AA seq
DB search
MSPTGPSHPGPSNARPSLAGLRRVLAEDPTFARVQAEAARGFDVRGQDYQISAPAGLRAV
LLAEMADGLAAGADEGPADGGLRPVVLAVTATGREAEDLTAALRAYLQADSVAEFPSWET
LPHERLSPRSDTVGRRLSVLRRLAHPESSTAGRLRVVVAPVRAVVQPIVAGLGELVPVTL
KVGQDMPFSNVVRSLADAAYARVDMVTHRGEFAVRGGIIDVFPPTEDHPIRVEFFGDEVD
QMRWFAVADQRSLSAPGVHHPTELHAPPCREILITPSVMSRAATLKAQLPAAADMLEKIA
GGITVEGMESLAPVLVDAMVPFVEQLPAGSISVIIEPEKVRRRAHDLAATNEEFLEAAWS
TASDGGAAPLDLSSQASAALHSASFRSLAETRSFSLEHEVSWWSITSLATDEELLPEIDV
LNLRAREPRGYQGDVAEMMDFIGSHVRDQWRIVVATEGPGPAQRLAELFHDADIPCARVD
TLEKEPQAGIIEVTTAAVGRGFVLDSLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAV
DPLQLVNGDSVVHEQHGIGRFIELIQRKVAGGGDGVREYLVLEYAPSKRGAPGDRLFVPT
DQLDQVTRYVGGDTPVLSKMGGSDWASTKSKARKAVKEIAGELIRLYSARMASKGHAFGP
DTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKA
VQDGKQVAILVPTTLLAQQHYETFTERFSGFPLRVKALSRFQGTKETKETVEGVKSGSVD
VVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEM
SLTGIRETSTLATPPEERHPVLTYVGPYTDRQTSAAIRRELMREGQVFLVHNRVSTIERT
AAKVRELVPEARVEVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIV
DGADKYGLSQLHQLRGRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQL
AMKDLEIRGAGNLLGGEQSGHIQGVGFDLYIRLVGEAVADFRGDAEEKAAEMKIELPVNA
HLPHDYVPGERLRLEAYRKLASAVTYEAIEEVLAELVDRYGEPPLPVQNLIAVARFRVGA
REAGLSDVALQGNFIKFSPAQLPESKLMRLTRMYPGSQSKPALDAVLIPKPKTARIGGRD
LQDAEILEWANGVIRNIFSDAPLAAPAVRG
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagccccactggcccgtcccatcctggcccgtccaacgctcgtccctcgctggccgga
ctccgccgtgtcctggccgaagacccgacgttcgcgcgggtccaggcggaggcggcgagg
ggttttgacgtccggggccaggattaccagatcagtgcgccggccggactccgcgccgtc
ctgctggcggaaatggcagacggcctggccgccggcgccgacgaaggtcccgccgacggc
gggctccgccctgtggtgctggcagtcaccgcgacgggacgcgaagcggaggacctgacg
gcggccctgcgtgcttacctccaggctgattcggtggccgagttccccagttgggaaacc
ctgccgcacgaacggctctcaccccgctcggacacggtgggccgccggctgtccgtcctg
cgccgtttggcgcacccggaaagttcgacggcgggccggctgcgtgtggtggtggcaccg
gtccgcgcggtggtccagccgatcgttgccgggctgggtgagctggtcccggtcacgctg
aaggtggggcaggacatgccgttctccaacgtggtgcggagcctcgccgacgccgcctac
gcacgcgtggacatggtcacccaccgtggcgaatttgccgtccgtggcggcatcatcgac
gtcttccctcccaccgaggaccatcccatccgcgtggagttcttcggcgacgaggtggac
cagatgcgctggttcgcggtggccgaccagcgctcgctgtcggcgcccggcgtgcatcac
cccaccgaactccatgccccgccctgccgcgaaatcctgatcacgccgtcggtgatgtcc
cgcgcggccaccctgaaggcgcagcttcccgcggcggcggacatgctggagaaaatcgcc
ggcggcatcaccgtggaaggcatggaatccctggccccggtgctggtggacgccatggtc
ccgtttgtggagcagctgcccgccgggtccatctcggtgatcattgaaccggaaaaggta
cgcaggcgcgcacatgatcttgcggccactaacgaggagttcctggaagcagcctggtcc
acggcctcggacggcggcgcggctccactggacctcagctcgcaggcgtcggcagctttg
cactccgccagcttccgttccctggccgaaacccggagcttctcgctggaacacgaggtg
tcctggtggtccatcacgtcactggccactgacgaggagctgctgccggagatcgacgtc
ctcaacctccgcgcccgggaaccgcgcgggtaccagggcgatgtggccgagatgatggac
ttcatcggctcccacgtccgggaccagtggcggatcgtggtggccacggagggacccggc
ccggcgcagcgcctggcggaactgttccacgatgccgacatcccctgtgcccgggtggac
actcttgagaaggagccgcaggcgggcatcatcgaggtgaccactgccgccgtcggacgc
ggttttgtcctggacagcctcaagctggggctgctcaccgaagcggaccttctgggaagg
acgtccgcgggctccaccaaggacatgcggcgcatgccgtccaagcggcggaatgccgtg
gacccgctgcagctggtcaacggcgattccgtggtgcacgaacagcacggcattggccgc
ttcatcgaactcatccagcgcaaggtggccggcggcggagacggcgtccgcgaatacctg
gtcctggaatacgccccgtccaagcgcggcgccccaggcgaccgcctgtttgtccccacc
gaccagctggaccaggtgacccgctacgtcggcggtgacaccccggtgctcagcaagatg
ggcggctccgactgggccagcaccaagtccaaagcccgcaaggccgtcaaggagatcgcc
ggcgaactcatccggctgtactccgcgcggatggcctcaaagggccatgccttcgggccg
gacacgccgtggcagcgtgagctggaggaggccttcccgtatgtggagacgccggaccag
ctgaccaccatcaacgaggtcaaggcggacatggagcgggagatccccatggaccgcctg
gtgtccggcgacgtgggctacggcaagaccgagatcgccgtccgggccgcgttcaaggcg
gtccaggacgggaaacaggtggcgatcctggtgcccaccaccctgctcgcccagcagcac
tacgaaacgttcaccgaacgcttctccggcttccccttgcgggtcaaagccctgtcccgg
ttccaagggaccaaggaaaccaaagagaccgttgagggcgtcaagagcggttccgtagac
gtcgtcattggaacccaccggctgctgtcgaaagacttcgcgttcaaggacctgggcctg
gtgatcgtggacgaggaacagcgcttcggtgtggagcacaaggaagcgctgaagaaaatg
cggaccaacgtggacgtgctggccatgagcgccacaccgattccgcggaccctggagatg
tcgttgaccggcatccgggaaacgtccacgctggccaccccgccggaggaacgccacccc
gtcctcacctacgtgggcccgtacacggacaggcagacctcggccgccatccgccgcgag
ctgatgcgcgaaggccaggtgttcctggtccacaacagggtttccacgatcgaacggacc
gccgccaaagtccgcgaactggtcccggaggcgcgcgtggaggtggcgcacgggcagatg
tccgagagccggttggagcagatcatcgtggacttctgggagaagcgcttcgacgtcctg
gtgtgcaccaccatcatcgaaaccggcctggacatctccaacgccaacaccctgatcgtg
gacggggcggacaagtacggcctctcccagctgcaccagctccgcggccgggtgggccgc
ggccgtgaacgcgcctatgcctacttcctgtacccgtccgagaagcccctgggcgaggtg
gcgctggaacggctcaaggccgtcgccacccacaacgagcttggcgccggcatgcagctg
gccatgaaggacctcgaaatccgcggcgccggcaacctgctgggcggcgagcagtcaggc
cacatccagggcgtgggcttcgacctctacatccgcctggtgggtgaggcggtggccgac
ttccgcggcgacgccgaggagaaggctgccgaaatgaagatcgagctgccggtcaacgcc
cacctcccgcatgattatgtgccgggggagcggctccgtctggaggcctaccggaagctg
gcctccgcggtgacctatgaggccatcgaggaggtccttgccgagcttgtggaccgctac
ggcgagccgccgctgccggtccagaacctcatcgccgtggcccgcttccgggtgggtgcc
cgcgaagctggcctgtccgacgtcgcgctgcaggggaacttcatcaagttctcgccggcg
cagctgccggagtcgaaactgatgcggctgacccggatgtacccgggttcccagtccaag
cccgccctggacgcggtgctgattccgaagcccaagaccgccaggattggcggccgcgac
ctgcaggacgccgaaatcctggagtgggccaacggggttatccgcaacatcttctccgac
gcaccgctcgccgctccggcagtaagaggttag
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