Pseudocitrobacter corydidari: G163CM_27500
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Entry
G163CM_27500 CDS
T07750
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psgc
Pseudocitrobacter corydidari
Brite
KEGG Orthology (KO) [BR:
psgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psgc03019
]
G163CM_27500 (hrpB)
Enzymes [BR:
psgc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G163CM_27500 (hrpB)
Messenger RNA biogenesis [BR:
psgc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G163CM_27500 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
Hemerythrin
DUF2732
Motif
Other DBs
NCBI-ProteinID:
UGS42025
LinkDB
All DBs
Position
complement(2942978..2945407)
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AA seq
809 aa
AA seq
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MSLLPVAAVLPDLLSALANAPAVLLNAPTGAGKSTWLPLQILREGNINGRIILLEPRRLA
ARNVAQRLAELLGEKPGETVGYRMRAETCVGPATRLEVVTEGILTRMIQHDPELTDVGLV
ILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDKLQRLLPDAPVIISEGRA
FPVERRYQALPTHQRFDEAVAIATAELLRAEPGSLLLFLPGVGEIQRVQEHLAARVASDV
LLCPLYGALSLSEQRQAILPAPVGKRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDV
RSGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLLGKEQAERAAAQSDAEILQSDLSSL
QLELLQWGCYDPQQLNWLDTPPAVNLAAARRLLTQLQALDGERLTAQGQKMAALGNDPRL
AAMLIAAKSDDEAATAARLAAILEEPPRGAGSDLGHAFSRSQSNWQQRSQQLLKRVNRRG
GKADSDAIPALLAQGFPDRIARRRGLDGRYQLANGMGAMLDSDNALSRHEWLIAPLLLQG
NASPDARILQAYALDIDALAARCPQLLEQSDTIEWDEAQGTLKALRRSRIGQLTVKVHPL
AKPSEDELHQAMLNGIRDKGLNVLNWTEDAQQLRLRLQCAARWLPDEAWPAVDEASLLAA
LEAWLLPHMGGVKSLRALKNVNVREALQAWLPWTLRQRLDSELPTHYTVPTGSRIAIRYD
DEKPPALAVRMQEMFGEAITPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQ
KEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgttgccggtcgccgctgttcttcccgatcttctttccgcactggcaaacgcg
cctgcggtattgcttaacgcgccgacgggggcggggaaatcgacatggctgccgctgcaa
attttgcgcgagggtaacattaacgggcggattattttgctcgagccgcgcaggctggcg
gcgcggaatgtcgcgcaacgactggctgaactgttgggtgaaaagccaggtgaaaccgtt
ggttaccggatgcgcgcggaaacctgcgtcgggccagctactcgtcttgaagtggtgacg
gaaggcattctgacgcgcatgatccagcacgatcctgaactgacggacgtagggctggtg
atccttgatgaattccatgaacgcagtttacaggcggatctcgcgctggcattgctgctt
gacgttcagcaggggctgcgtgacgacctgaagctgctgattatgtccgccacgctggac
aacgataagttgcagcgcttgttgcctgatgcgccggttatcatctctgaagggcgtgcg
ttcccggtggaacgccgctatcaggcgctgcccactcatcaacgttttgatgaagcggtg
gccatcgccacggcggaactgctgcgcgcagagccgggctcgctgctgctgtttttgccg
ggcgtaggcgaaatccagcgcgtgcaggagcatctggccgcgcgcgtggcgtccgacgtg
ctgctttgcccgctttatggcgcgttgtcgctcagcgaacagcgtcaggccattcttcct
gcgcctgtcggtaagcgtaaagtcgtgctggccactaatatcgccgaaaccagtctgact
atcgaaggtatccgcctggtggtcgattgtgcgcaggagcgggttgcgcgatttgatgtg
cgctccgggttgacccggctggtgactcagcgcgtcagtcaggcatcgatgacccagcgc
gcgggccgtgcagggcgactggagccgggtatctgtttacacctgctgggaaaagagcag
gcggaacgcgccgctgcgcaaagcgatgcggaaattctgcaaagcgatctctcttcactt
caactggaactgttgcaatggggctgctatgacccgcagcaactgaactggctggatacg
ccaccggcggtcaatctggctgcggcacggcgcttactgacgcagcttcaggcgctggac
ggcgaacgtctgacggcgcaggggcagaaaatggcggcgctgggtaacgacccgcgtctg
gcggcgatgctgattgccgcgaaaagtgacgatgaggctgctacggcggcccggctggca
gcaattcttgaggagccgccgcgcggtgcgggtagcgatctggggcatgcgttttcacgc
agtcagtcaaactggcagcagcgtagtcagcagctcctcaaacgagtgaatcgacgcggc
ggcaaagcggatagcgacgccattcccgcgctgctggcgcaaggttttcctgaccgtatc
gcccgccgtcgcgggctggatgggcgctatcagttggcgaacggtatgggcgcaatgctc
gatagcgataacgcgttaagccgccatgaatggctgattgcgccgctgttgttgcagggc
aatgcgtcgcccgatgcgcgtattttacaggcttacgcgctggatattgacgcactggcg
gcacgatgccctcagctgcttgaacagtccgataccatcgaatgggacgaggcgcaggga
accctgaaagcgctgcgccgtagccgcattgggcaactgacggtaaaagtccatccgctg
gcaaaaccctcggaagacgaattgcatcaggcgatgctcaacggcattcgcgataagggt
ttaaatgttctgaactggacagaagacgcgcagcagctacgcttgcgtctgcaatgtgca
gcgcgctggttgccagatgaagcctggccggcggttgatgaggcgtcgctgctggctgcg
ctggaagcctggctgctgccgcatatgggaggcgtaaaatcgttacgtgcgctgaaaaac
gtcaatgtcagggaggcattacaagcctggcttccctggacattacgacaacgtctggat
agtgagctaccaactcattacactgtgcccaccggaagccggattgctattcgctacgat
gatgaaaaaccgcccgcgctggcggtgcgaatgcaggagatgtttggcgaggcgatcacg
ccgaccatcgcccaggggcgggtgccgctggtactggagctgctctccccggcgcagcgc
ccattgcagattacgcgtgatttgagcgcgttctggcagggggcgtaccgggaggtgcaa
aaagagatgaaagggcgctatccgaaacatgtctggccggacgacccggcgaacaccgcg
ccgacgcggcggacgaaaaagtattcgtga
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