Stutzerimonas stutzeri RCH2: Psest_1339
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Entry
Psest_1339 CDS
T02391
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psh
Stutzerimonas stutzeri RCH2
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psh03019
]
Psest_1339
Enzymes [BR:
psh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Psest_1339
Messenger RNA biogenesis [BR:
psh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Psest_1339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
ABC_tran
DUF1409
Motif
Other DBs
NCBI-ProteinID:
AGA85897
UniProt:
L0GJC3
LinkDB
All DBs
Position
1446570..1450652
Genome browser
AA seq
1360 aa
AA seq
DB search
MTDATPAIDTLLKNLDQALFADRHRLRRQLHELRKQPDEAKLAQWLERFQASVAKVEARR
RSVPSIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLI
GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAP
IVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDV
LVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQ
QAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAH
RQLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVNV
ILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNKTEEGDFLGARQRRFWVHPSSVIGR
KKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQV
TLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEAK
ARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREASE
VTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLETK
AVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTGARVSDDAWAE
AAAGLESHLKMNIEVVDARGKFLGEGRDLAELTARFAEASQAALAPPQQKAEQKPVEAKG
FAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLAEP
AKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLAER
KRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVRE
TPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRDAE
LALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQVEP
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgcaacgcccgctatcgataccctgctgaagaatctcgaccaggccctgttc
gctgatcgccatcgcctgcgccggcagctgcatgagctgagaaagcaaccggacgaggcc
aagctcgcccaatggctggaacgttttcaggcctccgtagccaaggtcgaggcgcgccgt
cggagtgttccgagcattcgctacgacgacagcctgccgatcgcggccaagcgcgacgag
atcaaggccgcgctggaaaagcatcaggtgctggtgatcgccggtgagaccggctcgggc
aagaccacccagctgccgaagatctgtctggagatcggccgtggtgtacacgggctgatc
ggccatacccagccgcgccggctcgcggcacgcagcgtcgccacgcgggtggccgaggaa
atcggcacgccactcggcgagctggtgggttatcaggtgcgcttcgaggatcagagcaag
gacagctcgctgatcaagctgatgaccgacggcatcctgctggccgagacgcagcacgat
cgcttcctcgagcgttacgacaccatcatcgtcgacgaggcgcacgagcgttcgctgaac
atcgatttcctgctcggcttcctcaagaccctgctgccgcggcggccggacctgaaggtc
atcatcacttcggcgactatcgacctgcagcgcttttccgagcacttcgacggtgcaccc
atcgtcgaggtatccgggcgtacctacccggtggagacctggtatcggccactggcggcc
gagatcgacgaggatggcaaccgggtcgaggatgatctgaccgtcgaccagggtatcctc
gccgcgctggacgaaattacggcccacgagcagagcgtgggcaagcgccccggcgacgtg
ctggtgttcctgcccggcgagcgcgagattcgcgacgccgccgaggtgctgcgcaaggcc
aatctgaagttcaccgaggtgctgccgctgtatgcgcggctgacgccggccgagcaacag
aaaatcttccagccgcgaccggggcgcaagatcgtgctggccaccaacgtcgccgagacg
tcgctgaccgtgcccggtattcgctacgtgatcgattccggcaccgcgcgcatcagccgc
tacagctaccgcgccaaggttcagcgcctgccgatcgaggcggtgtcacaggccagcgcc
aaccagcgcaagggtcgctgcggacgggtcgaaccgggtatctgcattcggctgtacagc
gaggaagacttcctcggccggccggaattcaccgatccggagatcctgcgcaccaacctc
gccgcggtgatcctgcagatgctgcatctgcgcctgggggatatccaggatttccccttt
atcgagccgccggatggcaaggccatcagcgacggcttcaacctgttgcaggaactctcg
gcggtcaatcgcgaaaaccagctgaccccaatgggtcgccagctggcgcgcctgccgatc
gacccgcggcttggtcgcatgctcctcgaagctgcacagcagggcagcctcgccgaagtc
ctgatcgttgccagcgcactctcggtgcaggacgtgcgcgagcgtccggccgaccgtcag
caggcagccgaccaggcccatgcgcagtggaaggacccggactcggactttgccgcgctg
atcaatctctggcgcggtttcgaggaaaagcgccaggagctgggctccaaccctctgcgc
acctggtgccggaagaacttcctcaactacctgcgtctgcgtgagtggcgcgacgcccat
cgccagctgacgctcatcgcccgggagctcaagcttggttcgggcaggtcggcggatggc
tccgggcaagcagcgcacgccgataaggcacgtagggtggaagacggcgaagcctcttcc
gcgctttcggcgggggtcagcactcaacccgcaccgaccaaggacaccaaggtcaacgtc
atcctccgccagcaggccgaagccagcgaggccgcgcagaaggccaagagctacgcctcg
gtgcacaaggccatcctcgccggcctgctcagccagatcggcaacaagaccgaggagggc
gacttcctcggcgcccgccagcggcgcttctgggtgcatccctccagcgtgatcggccgc
aagaagcccaactggctgatggccgcggaactggtggaaaccaccaagctgttcgcgcgc
atggtcgccaagatcgagccggactggatcgagccgctggccgggcatctgatcaagaag
aatcacttcgagccgcactgggagaagaagcgcggccaagtggtggcctacgagcaggta
acgctttacggcatgatcgtcgtcggccgtcgaccggtgcattacggccccatcgacccg
cccgctgcccgcgagctgttcatccgcgaagggctggtgcgcggcgagatcaacagccgc
gcccgcgcgctcagcgccaatcgcgagctgctcgaacgtctcgacgagctggaagccaag
gcgcggcgccgcgacatcctcgccgacgaggaaaccctgttcgactactacgatgcgcgc
ctgccggcggacatctaccagaccgccagcttcgagaactggtacaagcgcgaaagtgcg
aagaacccgcagctgctgatcatgcgtgaggaagacgtgctcgcccgcgaggccagcgag
gtcaccgccgcgcagtacccggattacctgcgcatcggcgagctgcagttgccgctggaa
taccatttcgagcccaaccacccgcgcgacggcgtgaccctgcgcgtaccggcgccgctg
ctgccgcaattgcgcagcgagcggctcgactggctggtgcccggcttgctggaaaccaag
gcggtggccctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtgccggtgccg
gatttcgttggcgctgcgctggccaggatcgcttttggtgaaggctcgctgcccgaggcg
ctgggtcgcgagctgctgcgcatgaccggcgcgcgcgtatcggatgatgcgtgggccgaa
gcggcagccgggctggagagccacctgaagatgaacatcgaggtggtcgacgcccgtggc
aagtttcttggtgaaggccgcgacctggccgagctgaccgcacgcttcgccgaggccagc
caggccgccctggcgccgccgcagcagaaggccgaacagaagccggtcgaagccaagggt
tttgcccaggtcgcagaaaaggcccaggcgaagatggccgggctgtcgatgacggtctac
ccggcgctggtggaagaggcaggggtggtcaaggaagggcgctttccaacccaggccgag
gccgagtggcaacaccgccgcgcgctgcagcgcctgttgctgcagcagctggcggagccg
gccaagtacctgcgcaacaagctgccgggccttaccgagctgggcctgctctaccgcgac
atgggcaaggtcgatgcgctggtcgaggacatcctgctggccagcctcgacagctgcatc
cttgacggcgaagcccagctgccgcgtgatggcgccgcgctggcgtcgctcgccgagcgc
aaacgcggcgactggactgcacatgccgagcgcctggcacgtctgacactggaaatcctc
aagcactggcacggcctgcagaagcgcttcaagggcaagatcgacctggcccaggcggtg
gcgctcaacgacatcaaggcgcagctgggcaatctggtctatccgggctttgttcgcgag
acacctgccgagtggctgaaggagtatccccgctacctcaaggccatcgagcaacgcttc
gagaagatcggcgcgcagctgcagcgtgatcgggtctggtccggcgagctggccggctac
tgggagcagtaccagacgcgcctgaacaagcacctgcaggaaggcaagcgcgatgccgag
ctggcactgtatcgctggatgctcgaggagtatcgcgtctcgctctgggcgcagcagctc
ggcaccaggatggcggtttcggacaagcgtctaaacaagcagtggagccaggtcgagccc
tga
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