Pseudomonas shahriarae: HU773_013230
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Entry
HU773_013230 CDS
T07642
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pshh
Pseudomonas shahriarae
Pathway
pshh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pshh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HU773_013230 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshh03400
]
HU773_013230 (ligD)
Enzymes [BR:
pshh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HU773_013230 (ligD)
DNA repair and recombination proteins [BR:
pshh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HU773_013230 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QXH91777
LinkDB
All DBs
Position
complement(2959751..2962174)
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AA seq
807 aa
AA seq
DB search
MPKPLSEYQRKRNFKVTSEPSPSSPARRPALALTFVVQKHAARNLHYDFRLELDGVLKSW
AVPKGPSLDPSHKRLAVHVEDHPLSYGAFEGSIPAGQYGAGDVIVWDRGIWQPHDDPHKA
YAAGKLKFTLVGEKLAGDWALVRTRLKGSGDKEQWLLIKENDQQARPISDYDIVQAQPTS
VLSNARVGQPKTRQPTLPDQMAPQLATLVDRAPAGDWHYEIKFDGYRILARVRDGHVHLF
TRNGHDWSDRLPRQVKALAALKLKDCWLDGEVVSLNRDGLPDFQGLQQAFDSGRSQDLVY
YLFDAPFLHGQDQRSVALQERRAALKAALAGNQSPLLRFSEAFAADHHDILHSACSLGLE
GVIGKRAGSPYSSTRSADWIKLKCRRRQEFVIVGYTRPQGSRSGFGALLLAVHADRALVY
AGRVGTGFDQATLQTLYKKMQPLARQSSPLANPVTAAQARGVHWIRPQLVAEVQFAEWTR
EGLVRQAAFVGLRSDKPQEQIVHEPPLAQSRVSQIRITHPERIIDPTSGTQKAQLARFYE
DISEWLLPHLRHRPVALLRAPEGVDGEQFFQKHSERLAIPLITQLDQALDPGHARLMEIH
NLAALIGAVQMGAIELHTWGATVDKIDTPDLFVLDLDPDPALPWKSMLEAAQLVLSVLDE
LGLTAYIKTSGGKGLHLIVPLARRDGWDTVKAFAKAIALFMTQQLPERFTATSGPKNRIG
KIFIDYLRNGRGASTVAAYSVRARPGLPVSVPISRDELDSLRSAQQWNVTNLQARLNSLK
ADPWAGYANRQRLSKKMWQKLGAQPPE
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacccctgagtgagtatcagcgcaagcgcaacttcaaggtcacttcagaaccg
tcgccgtcaagccccgcacggcgcccagcgttagctttgacgtttgtggtgcagaaacac
gcggcacgcaacctgcactacgactttcgcctcgaactcgacggggtgctaaaaagctgg
gcagtgcccaagggacccagcctggacccgagccacaaacgcctggcggtgcatgtcgaa
gatcatccgttgagctatggcgcctttgaaggcagcatccccgccggccagtatggggcg
ggtgacgtgattgtctgggaccgtggcatctggcaaccccacgacgacccgcacaaggcc
tacgccgccggcaaactgaagttcaccctggtcggcgaaaagcttgcgggcgattgggcc
ttggtgcgcactcggctcaaaggcagtggcgacaaggagcaatggctgttgatcaaggag
aatgatcaacaggcgcgccccatcagcgattacgacatcgtccaggcccagcccacgagt
gtcttgagcaatgcgcgggtaggccagcctaagacccgccagcccaccctgcccgaccaa
atggcgccgcaactggcgaccctggtagaccgcgccccggctggcgactggcattacgaa
atcaaattcgacggctaccggatcctggcgcgggtacgcgatggccatgtgcacctgttt
acccgcaacggccatgactggagcgatcgcctgccccgccaggtcaaagccctcgcggcg
ctgaaactcaaggactgctggctcgatggcgaggtggtcagcctcaatcgcgacgggctg
ccggacttccagggattgcagcaggcgttcgatagcggtcgcagccaggacctggtgtat
tacctgttcgacgcgccgttcttgcacggccaggatcagcgcagtgttgccctgcaagag
cgccgggcagccctcaaggcggcattggcggggaaccagagcccattgctgcgcttttcc
gaagccttcgcggctgatcatcacgatatcttgcacagcgcctgcagcctgggcctggaa
ggtgtgatcggcaagcgcgccggcagcccctacagttccacgcgcagcgccgattggatc
aagctcaaatgccgccggcgccaggagttcgtaatcgtcggctacacccgcccccagggt
tcacgcagcgggtttggcgcgctgctgctggcagtccacgcggaccgtgccctggtgtat
gccgggcgcgtggggaccggcttcgatcaggcaaccctgcaaacgctgtataaaaaaatg
cagcccctggcccggcaatcctcgcccttggccaaccccgtgaccgccgcccaggcccgt
ggcgtgcactggataaggccgcagttggtggccgaagtgcaatttgccgaatggacccgc
gaaggcctggtgcgccaggctgcctttgttggcctgcgcagcgataaaccacaggagcag
attgtgcacgagccaccactggcgcaaagccgtgtttcacagatccgcattacccacccc
gagagaatcattgatcccaccagtggcacacaaaaggcgcaactggcccgattctacgaa
gatatcagcgagtggctcctgccccacttgcgccatcgcccggtcgcactcctgcgggca
cccgaaggggtcgacggcgagcagtttttccagaaacacagcgagcgcctggccattccc
cttatcactcaattggatcaggccctcgaccccggccatgcgcgcctgatggaaattcat
aacctcgcggcattgatcggcgccgtacaaatgggcgcgattgagctgcacacctggggg
gccacggtcgacaaaatcgacaccccggacctgtttgtactcgatctggacccggacccg
gcgctgccctggaagagcatgttggaggcagcgcaactggtgttgtcggtgctggatgaa
ctgggcctgactgcctatatcaagaccagtggcggcaagggcttgcacctgattgtgccg
ttggcgcgccgggatggctgggacacggtgaaagccttcgccaaggccattgcgctgttc
atgacacagcaactgccggagcgttttaccgccaccagcggccccaaaaaccgcatcggc
aagatctttatcgactacctgcgcaatggccgcggtgccagcaccgtcgccgcctattcg
gtacgcgcccgcccggggctgccggtttccgtgcccatcagccgagatgaactcgacagc
ctgcgcagcgcccagcaatggaatgtgacgaatttgcaggcgcgcttaaacagcctgaaa
gctgatccctgggcgggttatgccaaccgccaacggctcagcaagaagatgtggcagaaa
ctgggggcccagccgccagaataa
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