Plesiomonas shigelloides: SAMEA2665130_1043
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Entry
SAMEA2665130_1043 CDS
T04378
Name
(GenBank) type I restriction enzyme EcoKI subunit R
KO
K19789
DNA repair protein RadD
Organism
pshi
Plesiomonas shigelloides
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_1043
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
SAMEA2665130_1043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
zf-tcix
AAA_30
zinc_ribbon_2
AAA_22
AAA_16
SLFN-g3_helicase
AAA
zf-ribbon_3
TniB
Motif
Other DBs
NCBI-ProteinID:
SBT60576
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All DBs
Position
1:complement(1179062..1180828)
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AA seq
588 aa
AA seq
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MAFTLRPYQTEAVQAVITHFRHHDAPAVIVLPTGAGKSLVIAELARKARGRVLVLAHVKE
LVEQNHAKYCAYGLDADLFAAGLNAKQSDGKVVFGSVQSVARNLEAFNDAFSLLIIDECH
RVGDSEDSQYRQVIDHLRRHQPQLRILGLTATPYRLGKGWIYRYHYHGMTRADSSAECLF
RDCIYELPLRYMIKNHYLTPPHRLDMPVVQYDFSKLQPNQNGLFSERELNDSLRQQKRIT
PHIIAQVVEYAAERRGVMIFAATVEHAKEIYGLLPTGKAALITGDTPSIDRDQLIQAFKA
QTLRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPDKADCLILDYAG
NPHDLYTPEVGSHKPASDSQPVQVFCPACGFANQFWGKTDSAGQVIEHFGRRCQGWFEDD
DGAREQCDYRFRFKSCPHCGAENDIAARRCQQCDQVLVDPDDMLKAALNLRDALVLRCGG
MHLASGQDSKGEWLDITYFDEDGADVKERFYLSTSAQRHVFTLHFLRQHQRAPGVPLAWQ
NADDILKQQDLLRHPDFVVARQQGKYLKIRDKIFDYQGRFRKAHELRG
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggcttttactctccgcccctatcagaccgaagccgtacaggctgtgattacccacttt
cgccaccacgacgcgcctgcggtgattgtgctgcccaccggtgccggaaaaagtctagtg
attgcggagctggctcgtaaagcgcgtggacgggtgttagtactggctcacgtgaaagag
ttggtggagcaaaaccacgccaaatattgcgcctatggattggatgccgatttgtttgcc
gccggactgaatgccaaacagagtgatggcaaggtggtattcggcagcgtacaatcggtc
gctcgcaacttagaagccttcaatgatgccttttccctgctgatcattgatgaatgccac
cgcgtaggtgatagtgaagactcacaatatcggcaagtgatcgaccacttacgccgccat
cagcctcagctgcggatcctcggcctcactgccaccccctatcgactgggcaaagggtgg
atttaccgctaccactaccacggcatgacccgcgccgatagcagcgccgaatgcttgttt
cgcgattgtatttacgaactgccgctgcgctacatgattaagaaccattacctgacgccg
ccgcatcgcctcgatatgccggttgtgcaatacgattttagtaagctgcaaccgaaccaa
aacggcttattttccgaacgcgaactcaatgacagtctgcgtcagcaaaagcggatcacc
ccacatatcattgcgcaggtggtggaatatgctgccgagcgacgcggggtaatgattttt
gccgccaccgtggagcatgccaaagagatctacggcctgctacctaccggtaaagcggcg
ttgatcaccggcgatacgccgagcatcgatcgcgatcagctgattcaggcgtttaaagcg
caaacgttgcgctatctagtaaacgtgtcagtactgactaccggctttgatgcaccacat
gtggatctgattgccattttgcgcccgaccgaatcggtaagtttgtaccaacaaatcgtc
ggtcgcggtctgcgcctcgctcccgataaagctgattgcctcattttggactacgccggc
aacccgcacgacctgtacacccccgaagtgggaagccacaaaccggcctccgacagccag
ccggtacaggttttttgccctgcctgtggttttgccaaccaattttggggcaaaacagac
agcgccggtcaggtcattgagcactttggtcgccgctgtcagggctggtttgaagacgat
gatggcgctcgcgaacagtgcgactaccgttttcgctttaaaagctgcccgcactgcggc
gccgaaaacgacattgccgcgcgccgctgtcagcaatgcgatcaggtattggttgaccca
gacgatatgttaaaagccgccttgaacctgcgcgatgcgctggtactgcgctgcggaggc
atgcacctagcaagtggccaagacagtaaaggcgaatggctggatatcacctatttcgat
gaagacggcgcagatgtcaaagaacgcttctatctgagcaccagcgcacagcggcacgtg
tttaccctgcacttcctgcgtcaacatcagcgcgcgccaggcgtgccgttggcgtggcaa
aatgccgacgatatcttaaagcaacaagacttgctgcggcatcccgactttgttgtcgcg
cgacagcagggaaaatacctgaagatccgcgacaaaatcttcgactaccaaggacgcttt
cgcaaagctcatgagctgcgcggttaa
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