Plesiomonas shigelloides: SAMEA2665130_1304
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Entry
SAMEA2665130_1304 CDS
T04378
Symbol
uvrB
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pshi
Plesiomonas shigelloides
Pathway
pshi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SAMEA2665130_1304 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshi03400
]
SAMEA2665130_1304 (uvrB)
DNA repair and recombination proteins [BR:
pshi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA2665130_1304 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAMEA2665130_1304 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
UB2H
AAA_30
DUF87
AAA_22
DUF6779
Motif
Other DBs
NCBI-ProteinID:
SBT60829
UniProt:
A0A8I1W8W9
LinkDB
All DBs
Position
1:1476700..1478718
Genome browser
AA seq
672 aa
AA seq
DB search
MSRNFELVSEFAPAGDQPEAIRQLIDGLDAGLAHQTLLGVTGSGKTFTAANVIASLNRPT
MILAPNKTLAAQLYGEMKAFFPHNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIE
QMRLSATKALMERRDVVVVASVSAIYGLGDPDSYLKMMLHLRRGDTLDQRFILRRLSELQ
YTRNDQAFQRGTFRVRGEVIDIYPAESDEHAVRVELFDDEVERLSLFDPLTGQVQQDVAR
YTVYPKTHYVTPREKILEAIEKIKVELVERKQVLLDNNKLLEEQRISQRTLFDIEMMNEL
GYCSGIENYSRYLSGRNPGEPPPTLFDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKET
LVDYGFRLPSALDNRPLKFDEFEALAPQTIYVSATPGAYELEKSGGEVIEQVVRPTGLLD
PVVEVRPVTTQVDDLLSEIRLRSAINERVLVTTLTKRMAEDLTEYLEEHDVKVRYLHSDI
DTVERMEIIRDLRLGLFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLNGKAILYGDRITPSMARAIGETERRREKQQAFNERNGITPQGLNKAVADILDVG
GRVSNKGRQKSKGRKVAESEASYQVHSPAEAEQKMRELEQQMYQHAQNLEFEEAAAIRDQ
LQALREAFIKTS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaaactttgagctggtatctgagtttgcacccgcaggcgatcagccggaagcg
atccgccagttgatcgatggcctcgacgcagggctggcgcaccagaccttgctgggggta
accggctccggtaagaccttcaccgcggcaaatgtaattgctagccttaatcggcccacc
atgatcttggcgccgaataaaaccttggctgctcagttgtacggcgagatgaaagccttc
ttcccgcataacgccgtggaatacttcgtttcctactacgactactatcagccagaagct
tacgtgccgagtaccgatacctttatcgagaaagatgcgtcgatcaacgatcacatcgag
cagatgcgtttgtctgccactaaagcgctgatggagcgacgtgatgtggtggtggtggct
tcggtgtcggcgatttatggtctgggcgatcctgattcctacctgaaaatgatgttgcac
ttgcgccgtggcgatacgctggatcagcgttttatcctgcgtcgtttgtcggagctgcaa
tacacccgcaacgatcaggcatttcaacgcgggactttccgtgtgcgtggcgaagtgatt
gatatttatccggcagaatcagacgagcatgcggtgcgtgtggagctgtttgatgacgag
gttgaacgcttgtcattgtttgacccgctgacagggcaagtgcagcaggatgttgcgcgc
tataccgtgtatccaaaaactcactatgtaacaccccgcgagaagatcttagaggcgatc
gagaagatcaaggtcgagctggtcgagcgtaagcaggtcttgctggataacaacaagttg
ctggaagagcagcgcatcagtcagcgtacgctgtttgatattgagatgatgaatgagctg
ggatattgctcgggcattgaaaactattcgcgctacctttctggccgtaatccgggcgag
ccgcctccaaccttgtttgactatctacctgccgatggcttgctgattattgatgagtca
cacgttacggtgccgcaaattggcgctatgtataaaggtgaccgttcgcgtaaagaaacg
ctggtggattatggttttcgcctaccatcggcgttggataaccgtccgttgaaattcgat
gagtttgaggcgctggctccgcagaccatttatgtatcggccacgccgggggcgtatgag
ctggagaaatctggcggcgaggtgatcgagcaagtagtgcgtccgacgggcttgctggat
ccggtggtggaagtgcgtccggtaaccactcaggtggatgatttgctgtcggagatccgt
ttgcgctcggcgattaatgaacgggtactggttactacgctgaccaaacgcatggccgaa
gatctgaccgaatatctggaagagcatgatgtgaaggtgcgctatctgcactcagatatt
gatactgtcgagcggatggagatcattcgcgacctgcgtcttggcctgtttgacgtgctg
gtgggaattaacctgctgcgtgaggggctggatatgccggaggtatcgctggtcgcgatt
ctggatgcggataaagaaggcttcttgcgctccgaacgttcattgattcagactattggt
cgtgcggcgcgtaaccttaacggtaaggcgattttgtacggtgataggatcacgccatca
atggcgcgcgctattggtgaaacagagcgtcgtcgtgagaaacaacaagcgtttaacgaa
cgtaacgggattacgccgcaagggctgaataaagccgtggccgatattctggatgtcgga
gggcgcgttagcaataaaggtcgccagaaatccaaaggccgtaaagtggccgagtctgag
gctagctatcaggtgcattcgccagcagaagcagagcagaagatgcgagagctggagcag
cagatgtatcaacatgcgcagaatctggagtttgaggaagcggcggcgatccgcgatcag
ctgcaggcactgcgagaggcgtttatcaaaacctcttga
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