Pseudoalteromonas shioyasakiensis: KQ246_02515
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Entry
KQ246_02515 CDS
T08873
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ246_02515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psho03019
]
KQ246_02515
03009 Ribosome biogenesis [BR:
psho03009
]
KQ246_02515
Enzymes [BR:
psho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KQ246_02515
Messenger RNA biogenesis [BR:
psho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KQ246_02515
Ribosome biogenesis [BR:
psho03009
]
Prokaryotic type
rRNA helicases
KQ246_02515
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
P-loop_SecA
Rap1a
Motif
Other DBs
NCBI-ProteinID:
QWV05447
LinkDB
All DBs
Position
complement(526407..528227)
Genome browser
AA seq
606 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFESLQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNEPEQVHISARNSTVSTVEQVFWNAHVHKNKAIVRFLEA
EQYDGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKNGLVDIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVDLPTAKVVEEKRIKALQDKLTIALENKDITFFNQVAADMAEKLELSAEDLA
GALLCLAQQQSPIKVEEVKVQPRGERNERRRNERGDRAERGDRQGRERKPREPRERNSRS
MGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDVL
DHFQKVFICKRPMNMTLTQDQGPAAPRSERPSGDRGDKKRSFKDKDRGEKRGGPRKERRP
VSFTAN
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaatccttaaagcagtt
gaagagttgggttacaagactccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcgcaaacgggtacaggtaaaacagcagcatttgca
ctgccgttactaaataatattgacccgtctgtgaagcagccacagatccttgttttaacg
cctacgcgtgaacttgcgatccaagtagctgaggcattcgaacaatatgctaagcatact
cgtggtgttgaagttttagccctttatggtggccaaagctacagcatccaactaagtgca
cttcgtcgtggcgcgcaaatcattgttgcaacgccaggtcgcttaattgaccacattaac
cgtggcacaatcaagtttgagagcttacaagcccttgttcttgatgaagcagacgaaatg
ttacgcatgggcttcattgatgatgtagaaagcatcatggagaaaacgccacgtgaaaag
caaacatgtcttttctctgcgaccatgcctaagcaaattcaaaatatcagcagcaagtac
atgaatgagcctgagcaagttcatatctctgctcgtaactcaactgtatctactgttgag
caagtattttggaatgcacatgtacacaaaaacaaagctatcgttcgcttcttagaagct
gaacaatacgatggtgcaattgttttcgtacgtacacgtaacgacactgtacagttagct
gaattacttgagcgcgaaggtttctctgccgcaccacttaatggtgatatgaaccaacaa
gcacgtgagcgaacagtagaccgtttgaaaaacggcctagttgatatcgttattgcaaca
gacgttgctgcacgtggtcttgatgtagaccgtttaagcttagtaatcaactacgatatt
ccacaagactcagaagcctacgttcaccgtattggtcgtactggtcgtgcgggtcgtaca
ggtaaagcgattcttttcgtaaaacataacgagcgttatttacttaaaaatatcattcgt
catacgaagtcagagatcgcacaagttgatttaccaacagcaaaagtagttgaagaaaaa
cgtattaaagctcttcaagacaaattaactattgctcttgaaaacaaagatatcactttc
tttaaccaagtagctgctgacatggcagaaaagcttgagctaagtgctgaagatttagcc
ggtgcattactttgtttagcgcagcaacaatcaccaatcaaggttgaagaagttaaagtt
caaccgcgtggcgaacgtaacgagcgtcgtcgtaacgaacgaggtgatcgtgctgagcgt
ggcgaccgtcaaggacgtgagcgtaaacctcgcgagccacgtgagcgcaatagccgcagc
atgggccctatggatacttaccgtatcgaagttggtcgtgagcacggtgtacaagttaaa
aatatcgttggtgcgattgctaacgaagctgatatctcaagcaaattcattggtgatatc
cgcttacacgacagtcacagtacggtacagttaccacagaacatgccaaaagatgtgctt
gatcacttccaaaaggtgttcatctgtaaacgtccgatgaatatgacgctaacgcaagac
caaggtcctgcggctcctcgctctgaacgcccaagcggtgatcgtggtgacaaaaagcgt
agcttcaaagacaaagatcgtggtgaaaaacgtggcggcccacgtaaagagcgtcgccca
gtgagcttcactgcgaactaa
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