Pengzhenrongella sicca: J4E96_16410
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Entry
J4E96_16410 CDS
T07613
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psic
Pengzhenrongella sicca
Pathway
psic03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4E96_16410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psic03400
]
J4E96_16410 (mfd)
Enzymes [BR:
psic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4E96_16410 (mfd)
DNA repair and recombination proteins [BR:
psic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4E96_16410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
LSDAT_prok
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTE28890
UniProt:
A0A8A4ZAA9
LinkDB
All DBs
Position
complement(3582183..3585809)
Genome browser
AA seq
1208 aa
AA seq
DB search
MNLTGLLPALLADPAAAEAAQLVRTRGSVDIVGPAGIRPPLLAAMAAGRPLVVVTATGRD
ADDLASSLRCYLPPDDVAVLPAWETLPHERLSPRSDTVARRLAVFRRLAHPTDGSGQTGP
IRVLVLPVRALLQPVVAGLGELEPVELRVRDRADLAAIADRLVAAAYARVDMVERRGEFA
VRGGILDVFPPTEDHPLRVEFWGDEVEEIRWFAVADQRSLEVAERGVWAPPCREILLTPQ
VRARAAALVEQYPGAIEMLGRLAEGIVVEGMESLAPVLADAMVPVLDLVPADALLVVADP
ERVRRRAHDLVATTEEFLAAAWTSAAAGGSTPIDLRAASFATFAQARDIAADRGLGWWTL
SAFGLDPEAATGADDDAPVGADVVAPAGVAGAVDAALTISARDVASYRGDVERAVDDVRA
LQQAGWRLVLTTEGHGPARRMVEQLAAADVPARLVGEIVTEPEGGVVLVTPAPVGPGFVA
PDRRLAVFSESDLTGRAGTSTRDMRKMPSKRRNVVDPLQLRPGDNVVHEQHGVGRFAELV
QRTIGSGAHASTREYLVIEYAPSKRGHPGDRLYVPTDQLDQVTKYTGGEAPTLNKMGGGD
WAKTKGRARKAIKEIAAELIRLYSARMATSGHAFSPDTPWQRELEDAFAYVETPDQLATI
EEVKGDMEKTVPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHLDTF
SERYAPYPVRVKALSRFQSPAESKEVLEGLADGTVDVVIGTHRLITGEVHFKDLGLVVVD
EEQRFGVEHKETLKQLRTNVDVLSMSATPIPRTLEMAITGIREMSTLATPPEERHPVLTF
VGAYDEKQITAAIRRELLREGQVFYVHNKVASIDRAAARLAELVPEARIAVGHGKMPEHT
LERVIGDFWEKKFDVLVCTTIIETGLDISNANTLILERADVLGLSQLHQLRGRVGRGRER
AYAYLLYPPEKPLTETAHDRLATMAAHTDLGAGIQIAMKDLEIRGAGNLLGGEQSGHIEG
VGFDLYIRMVGEAVAGFRGDAPEEAPEITIELPVDAHIPHDYIAHERLRLEAYRKLAAGQ
TPQALAEVRAELVDRYGPIPEAIENLFAVADFRNVARTAGLADVTAQGKFVRFAPVDLPE
SAQLRLKRLYPGTVLKPALRTILVPFPTTARIGGRPLHGGEILAWVRQLVDAIVVGDVGA
AAAAASRS
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgaccggactgctgcccgccctgctcgccgaccccgcggccgccgaggccgcg
cagctcgtgcgcacgcgcggcagcgtcgacatcgtcggccccgccgggatccgcccgccc
ctgctcgcggcgatggccgccgggcgaccgctcgtggtcgtcaccgcgacgggccgggac
gccgacgacctcgcctcgtcgctgcgctgctacctgccgcccgacgacgtcgcggtgctg
cccgcgtgggagacgctcccgcacgagcgcctgtccccgcgcagcgacaccgtcgcgcgg
cggctcgcggtgttccgtcggctcgcgcacccgaccgacgggtccgggcagaccggcccg
atccgggtgctcgtgctgcccgtgcgcgcgctgctgcagcccgtggtggccggcctcggc
gagctcgagccggtcgagctccgggtgcgggaccgcgcggacctcgcggcgatcgccgac
cgactcgtcgccgccgcgtacgcgcgcgtcgacatggtcgagcggcgcggcgagttcgcc
gtgcgcgggggcattctcgacgtcttcccgccgaccgaggaccacccgctgcgcgtcgag
ttctggggcgacgaggtcgaggagatccgctggttcgccgtcgccgaccagcgcagcctc
gaggtcgccgagcgcggcgtgtgggccccgccctgccgcgagatcctgctcacgccccag
gtgcgcgcgcgcgccgcggcgctcgtcgagcagtacccgggcgcgatcgagatgctcggt
cgcctcgccgaggggatcgtcgtcgagggcatggagtcgctcgccccggtgctcgccgac
gccatggtgcccgtgctcgacctcgtgccggccgacgcgctgctcgtcgtcgcggacccg
gagcgcgtgcgccggcgcgcgcacgacctcgtcgccaccaccgaggagttcctcgcggcc
gcgtggacgtccgccgcggcgggcggcagcaccccgatcgacctgcgcgccgcgtccttc
gcgacgttcgcgcaggcgcgcgacatcgcggcagaccgcgggctcggctggtggacgctc
agcgcgttcgggctcgaccccgaggccgcgaccggcgccgacgacgacgcaccggtcggc
gccgacgtcgtcgcaccggccggcgtcgcgggcgcggtggacgccgcgctgaccatctcc
gcgcgcgacgtcgcgagctaccgcggcgacgtcgagcgcgcggtcgacgacgtgcgcgcg
ctgcagcaggccggctggcggctcgtgctcaccacggagggccacggcccggcccgccgg
atggtcgagcagcttgccgccgccgacgtgccggcccgcctcgtcggcgagatcgtcacc
gagcccgagggcggcgtcgtcctcgtcaccccggcgcccgtggggcccgggttcgtcgcg
ccggaccggcggctcgcggtgttctccgagtccgacctgaccgggcgggccggcacctcg
acccgcgacatgcgcaagatgccgtcgaagcggcgcaacgtcgtcgaccccctgcagctg
cgcccgggcgacaacgtcgtgcacgagcagcacggcgtcgggcggttcgccgagctggtg
cagcggaccatcggctccggcgcgcacgcctcgacccgcgagtacctcgtgatcgagtac
gcgccgtccaagcgcgggcaccccggcgaccggctgtacgtgccgaccgaccagctcgac
caggtgaccaagtacaccggcggcgaggcgccgacgctcaacaagatgggcggcggcgac
tgggccaagaccaagggccgcgcgcgcaaggcgatcaaggagatcgccgccgagctcatc
cggctgtactcggcccggatggcgacctccgggcacgcgttcagcccggacacgccgtgg
cagcgcgagctcgaggacgcgttcgcgtacgtcgagacccccgaccagctcgcgacgatc
gaggaggtcaagggggacatggagaagacggtcccgatggaccgcctcatctcgggcgac
gtcggctacggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtccaggacggc
aagcaggtggcggtgctcgtgccgacgacgctgctcgtccagcagcacctcgacacgttc
tcggagcggtacgcgccgtaccccgtgcgggtcaaggcgctgtcgcggttccagtcgccc
gccgagtcgaaggaggtcctcgaggggctcgccgacggcaccgtcgacgtcgtcatcggg
acccatcgtctgatcacgggcgaggtgcacttcaaggacctcggcctcgtcgtcgtcgac
gaggagcagcggttcggggtcgagcacaaggagaccctcaagcagctgcgcaccaacgtc
gacgtgctctcgatgagcgccacgcccatcccgcgcacgctcgagatggcgatcaccggc
atccgcgagatgtcgaccctcgcgacgccgcccgaggagcgtcacccggtcctgacgttc
gtcggcgcgtacgacgagaagcagatcaccgccgcgatccggcgcgagctgctgcgcgag
ggccaggtgttctacgtgcacaacaaggtcgcgtcgatcgaccgggccgccgcgcggctg
gccgagctcgtgcccgaggcgcgcatcgccgtcggccacgggaagatgcccgagcacacg
ctcgagcgcgtgatcggcgacttctgggagaagaagttcgacgtgctcgtgtgcacgacg
atcatcgagaccgggctcgacatctccaacgcgaacacgctcatcctcgagcgcgcggac
gtgctcgggctgtcccagctgcaccagctgcgcgggcgggtcggccgcgggcgcgagcgc
gcgtacgcgtacctgctctacccgccggagaagccgctcacggagaccgcgcacgaccgg
ctcgcgacgatggcggcgcacaccgacctgggcgccggcatccagatcgcgatgaaggac
ctcgagatccgcggcgcggggaacctgctcggcggcgagcagtccgggcacatcgagggc
gtcgggttcgacctgtacatccgcatggtgggggaggcggtcgcgggcttccgcggcgac
gcgcccgaggaggcgcccgagatcacgatcgagctgccggtcgacgcgcacatcccgcac
gactacatcgcgcatgagcggctgcgcctcgaggcgtaccgcaagctcgcggcgggccag
accccgcaggcgctcgccgaggtgcgggcggagctcgtcgaccgctacggcccgatcccc
gaggccatcgagaacctgttcgcggtcgcggacttccgcaacgtggcccgcacggccggg
ctcgcggacgtgacggcgcagggcaagttcgtgcggttcgcgccggtggacctgcccgag
tcggcccagctgcggctcaagcggctctacccgggcacggtgctcaagccggcgctgcgc
acgatcctcgtgccgttcccgacgacggcgcgcatcggcgggcggccgctgcacggcggc
gagatcctggcgtgggtgcgccagctcgtcgacgcgatcgtggtcggcgacgtcggcgcg
gccgccgcggccgcgagccggtcctga
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