Pseudomonas sichuanensis: LOY51_15505
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Entry
LOY51_15505 CDS
T08582
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psih
Pseudomonas sichuanensis
Pathway
psih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LOY51_15505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psih03400
]
LOY51_15505 (ligD)
Enzymes [BR:
psih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LOY51_15505 (ligD)
DNA repair and recombination proteins [BR:
psih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LOY51_15505 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UVL87205
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All DBs
Position
3465991..3468459
Genome browser
AA seq
822 aa
AA seq
DB search
MAKPLQEYQRKRDFDATPEPAGQRARPRPAHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYADFEGRIPEGHYGAGDVIVWDRGVWQPEGDPREA
YAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGQARSETDYSIVEALPDSVL
SERTLPPRRPAKASTSTRKPKAGRKALPKVLQPQLATLVDSPPSGDWHYEVKFDGYRILA
RIDGDDVRLFTRNGHDWSTKMPRQIEALRALGLDAAWLDGEMVVAGDNGVADFQALQNAF
DTEHDERITYYLFDLPWLGSEDLRDLPLQARRATLAKLLEGNASPLLRYSADFKESVDSL
LDSACRLELEGLIGKRADSPYGCRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLL
ALHDHDSGQLRYAGKVGTGFSAATLDSILARLKPLQTAKPPLPNPPTGAETRAVHWLKPQ
LLAEVAYAQMTREGIVRHAVFHGLRDDKPATAIDLEQAMPAKRAAQTKPEALGTLRLTHS
DRVVDATTGATKRQVAQYYAQVADWLLPQLKDRPVALVRAPDGLAGELFFQKNPGQLHIP
HVLSYSKAQAGQTAMVLNRADSLLGAVQMNTLELHTWNATTKDFDKPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKVFLKTSGGKGMHLVVPLTRRAGWDEVKDFSHALVEHMA
GLFPDRLSAVSGPKNRIGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELSQLK
GANQWHIGNLQARLAEVDDPWAEMARTRQSITVRMRKQLGID
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcgacgccacacccgagcca
gcgggccaacgcgcccgcccccgcccggcccatgcgctgcagtactgcatccagaagcac
gacgccagccacctgcactacgacttccgcctggagctcgacggcaccctcaagagctgg
gcgatccccaaggggccctccctcgaccccaaggtccgccgcctggcggtgcacgtggaa
gatcacccgttggactacgccgatttcgaaggacgcatccccgaagggcactacggcgcg
ggcgacgtgattgtctgggaccgaggtgtctggcaacccgaaggcgacccgcgcgaagcc
tatgccaagggcaagctgcgctttcgcctgcagggcgagaagctgtcgggggtgtggaat
ctgtttcgcacccacctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
gggcaggcgcgcagcgaaaccgactacagcatcgtcgaagccttgccagacagcgtgctg
agcgagcgcaccctgccgccgcggcgccccgccaaggcgagcacctctacacgcaagccc
aaggccggccgcaaagccctgccgaaagtgctgcagccgcaactggctaccttggtcgac
tccccacccagcggcgactggcactatgaagtcaagttcgatggctaccggattctggcg
cgcatcgacggtgacgacgtacgcctgttcacccgcaatggccacgactggagcaccaag
atgccccgtcagatcgaggcactccgcgccctggggctcgacgcagcatggctggacggc
gagatggtggtggccggcgacaacggtgtggccgacttccaggccctgcagaacgcattc
gacaccgagcacgacgaacgcatcacctattacctgttcgacttgccctggctgggaagc
gaagacctgcgcgacttaccgctacaggcgcgacgcgccaccctggccaagctgctggaa
ggcaatgcttcgccgctgctgaggtattccgccgatttcaaggaatctgtcgactcgctg
ctcgacagcgcttgccggctggaactcgaggggctgattggcaagcgtgccgacagccct
tatgggtgtcggcgcagcagtgactggatcaaactcaagtgcaagcagcgccaggagttc
gtgatcgtcggctacaccgaccccaagggcagccgccacggcttcggcgccctgctgctg
gccctgcacgatcacgacagcggccagttgcgctacgccggcaaggtcggcaccggcttc
agcgccgccaccctggacagcatcctcgcccggctgaaaccgctgcagaccgccaaacca
cccctgcccaaccctcccactggcgccgaaacccgcgccgtgcattggctcaagccacag
ctgctggccgaagtcgcctatgcccagatgacccgcgaaggcatcgtgcgtcacgcggtg
ttccacggcctgcgcgacgacaaacccgccaccgccatcgacctggagcaggccatgccc
gccaagcgcgcagcacaaactaaacccgaggctctgggtaccctgcgcctgacccactcc
gaccgcgtggtcgacgcaaccaccggcgccaccaagcgccaggtcgcacagtactacgcc
caggtcgccgactggctgctgccacagctgaaggatcggcctgtagccctggttcgggca
ccggatggcctggccggcgagctgttcttccagaaaaaccccggccagctgcatatcccc
cacgtgctcagctacagcaaggcccaggccggccagacggccatggtgctcaaccgcgcc
gacagcctgttgggcgcggtgcagatgaacacgctggaactgcacacctggaatgccacc
accaaggacttcgacaagcccgaccgcttcgtcctcgacctggaccctgatcccgcgctg
ccctggaaagccatgctggaggccacccagctgacccttaccctgctcgatgagctgggc
cttaaggtctttctcaagaccagcggcggcaagggcatgcacctcgtcgtgccactgacc
cggcgcgcggggtgggacgaggtgaaggacttcagccatgccctggtcgaacacatggcc
gggctgttccccgatcgcctcagcgcggtgtccggcccgaagaaccggatcggacggata
ttcatcgactacctgcgcaacggcaagggtgccaccaccgtcgccgcctactcgctgcgg
gcccgcgagggcctgccggtatcggtgccgatctggcgcgaagagctgagccagctcaag
ggcgccaaccaatggcacatcggcaacctgcaggcacggcttgccgaggtggacgatccg
tgggccgaaatggccaggacccgtcagtcgattaccgtacgtatgcgcaagcaactgggg
atcgactga
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