Pseudomonas siliginis: NF676_16195
Help
Entry
NF676_16195 CDS
T08569
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NF676_16195 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_16195 (ligD)
Enzymes [BR:
psii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NF676_16195 (ligD)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NF676_16195 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UST77704
LinkDB
All DBs
Position
complement(3530575..3533208)
Genome browser
AA seq
877 aa
AA seq
DB search
MNRNLDDYNRMRDFSATSEPAAVKRSGRKSAKDHALQFCIQKHDASHLHYDFRLELDGAL
KSWAVPKGPSLDPSVKRLAIHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPLEDP
HKAYAKGRLKFELQGEKLGGVWNLVRTHMPGKKEQWFLIKHQDNAARPQDDFDVLVAEPD
SVLSERTIVGKSAAAADKAKPVKKAPAKPRKQASGQLTGARKAKLPALIKPELATLVDSA
PEGQWSYEIKFDGYRIMARIDHDEVQLFTRNGHDWTHKLPQQAKALAALGLESAWLDGEM
VVANEQGVPDFQALQNAFDAGRSGNIVYYLFDVPYLNGVDLRDVPVEERRAALSTILGAQ
KESSTLRFSEAFEETPDALLNSACQMQMEGLIGKRLGSPYVSRRSGDWIKLKCKHRQEFV
IVGYTDPKGARSAFGALLLGLHDADSGELRYAGKVGTGFNETTLKSILAQLKPLQTKTSA
VVNPPSGFEAKGVHWLKPKLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERAKPV
KAAKPEKTEKTEKTEKTKTAEKQPAKKTAASKKAETAPSQAGLAGGKVRITHPDRVIDAV
SGTTKMQLAQYYASVAEHILPQLKDRPVALVRAPDGIAGELFFQKNADRLAIPGITALDK
DVTGQPVMMINNPEALVGAVQMSTVELHTWNATKVDLDKPDRFVLDLDPDPALPWKSMVE
ATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPDRI
SAVSGPKNRVGRIFIDYLRNGLGATTICAYAARAREGMPVSVPLYREEVAEIKGGNHWNI
YNVHERLTEVGDEPWADMKKTRQTITAEMRKRVGMKK
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggaacctcgacgattacaaccgcatgcgtgatttttccgcgacgtcggaaccg
gccgcagtcaagcgctcgggccgtaagtcggccaaggatcatgccttgcagttctgcatc
cagaagcacgacgcttcgcacctgcattacgactttcgcctggaactcgacggcgccctg
aagagttgggcggtgccgaaggggccgtcgctggacccgtcggtcaagcgtctggcgatt
catgtcgaggatcatccgctcgattacgcgacgttcgaaggcagcattcccgaggggcat
tacggtgccggtgatgtgatcgtctgggatcgcggcgtgtggattccgctggaggatccg
cacaaggcctatgccaagggccggctcaagtttgagttgcaaggcgagaagctcggcggc
gtgtggaatctggtgcgcacgcacatgccgggcaagaaggaacaatggttcctgatcaag
catcaggacaacgccgcgcgcccgcaggatgatttcgacgtcctggtcgccgagcccgac
agcgtgctcagcgagcgcacgattgtcggcaaatcggcggctgctgccgataaagccaaa
ccggtgaaaaaggccccggccaagccgcgcaagcaggcgtccgggcagcttaccggcgcg
cgcaaggccaagctcccagcgctgatcaagccggaactggcgacgctggtcgacagcgcg
cccgaagggcagtggagctacgagatcaagtttgacggctaccggatcatggcgcggatc
gatcacgatgaggtgcagctgttcacccgcaacggccatgactggacgcacaaactgccg
cagcaggccaaagcgctggcggcgctgggtctggaatcggcctggctcgatggcgaaatg
gtcgtggccaacgagcaaggcgtgccggattttcaggcgctgcagaatgccttcgatgcc
gggcgcagcggcaatattgtttattacctgttcgacgtgccgtatctcaatggcgtcgac
ctgcgcgacgtgccggtggaagaacgccgcgccgcgctgagcaccatcctcggcgcgcag
aaagaatcgtcaacgctgcgcttctccgaagccttcgaagaaacccccgatgcgctgctc
aacagcgcctgccagatgcagatggaaggactgatcggcaagcggctcggctcgccttat
gtgtcgcggcgcagcggtgactggatcaagctcaagtgcaagcatcgccaggaattcgtc
atcgtcggctacaccgatccgaaaggtgcgcgcagtgctttcggcgcgttgctgctcggc
ctgcacgacgctgacagtggcgagttgcgctacgccggcaaggtcggcaccgggttcaac
gaaaccacattgaaaagcatcctcgcccaactcaagccgttgcagaccaaaacctccgca
gtggtcaatccgcccagcggtttcgaggccaaaggcgtgcactggctcaaacccaaactg
ctggccgaagtggcattcgccgagatgaccaaggacggctcggtgcgccacgccgtgttc
catggtttgcgcgatgacaaaccggccaaggacattaccgaagagcgagcgaagcctgtg
aaagctgccaagcccgaaaaaaccgaaaaaaccgaaaagaccgaaaagaccaaaaccgcc
gaaaagcagccggcaaagaaaaccgccgccagcaaaaaagccgaaaccgcgccttcgcaa
gcaggtctggccggcggcaaggtacgcatcactcaccccgatcgagtgatcgatgcggtc
agcggcacgaccaagatgcaactggcgcagtattacgccagcgttgccgaacacatcctg
ccgcaactcaaggatcgtcccgtggccttagtgcgtgcaccggacggcatcgccggcgaa
ctgttcttccagaagaacgccgatcgcctggccattcccggcatcaccgccctggacaag
gacgtcaccggccagccagtgatgatgatcaacaatcccgaagcgctggtcggcgcggtg
cagatgagcaccgtcgaactgcacacttggaacgcgacgaaggtagatctggacaagccc
gatcgcttcgtcctcgacctcgacccggatcctgcgttgccatggaaaagcatggttgaa
gccaccgcgctgaccctcactgtgctcgatgagctgggcctcaaagccttcctgaaaacc
agcggcggcaaaggcattcacttggtggtgccattgacgcgcaagcatggctgggacgaa
gtgaaggacttcagccacgccatcgtcagccacatggccaagttgctgccggaccggatt
tcagcggtgtccgggccgaaaaaccgcgtcgggcggatcttcatcgattacctgcgcaac
ggcctcggtgccaccaccatttgcgcctacgccgcacgggcgcgggaaggcatgccggtg
tcggtgccgctgtaccgagaggaagtcgctgaaatcaagggcggtaatcactggaacatc
tacaacgttcacgagcgtctgaccgaagtcggcgatgagccttgggcggacatgaagaaa
acccgtcagaccatcaccgccgagatgcgcaagcgcgtcggcatgaaaaagtga
DBGET
integrated database retrieval system
