Pseudomonas silesiensis: PMA3_17285
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Entry
PMA3_17285 CDS
T05412
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psil
Pseudomonas silesiensis
Pathway
psil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PMA3_17285 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psil03400
]
PMA3_17285 (ligD)
Enzymes [BR:
psil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PMA3_17285 (ligD)
DNA repair and recombination proteins [BR:
psil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PMA3_17285 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ANJ56804
UniProt:
A0A191YVL8
LinkDB
All DBs
Position
complement(3903701..3906436)
Genome browser
AA seq
911 aa
AA seq
DB search
MNKNLDDYNRMRDFSATSEPAAKPSSKKKAQDHALQFCIQKHDASRLHYDFRLELDGALK
SWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPQEDPA
KAYAKGKLKFELQGEKLGGLWNLVRTHMPGKQEQWFLIKHQDGAAKPESEYDVVVAEPDS
VLSDRTILPKKSKAAAKPKPVKKPAAAAPKAQATPLTGARKARLPEQLKPELATLVEKAP
GGEWSYEIKFDGYRIMARIDHGEVQLFTRNGHDWTHKLPKQAEALAALGLESAWLDGEMV
VADEQGVPDFQALQNAFDSGRSGAILYYLFDIPYLNGVDLREVPVEERRAALATVLNANE
DPLLRFSDAFGEEPEALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIKLKCKHRQEFVVV
GFTDPKGSRNGFGALLLGLHDRDSGELRYAGKVGTGFNETTLKHIHEQLKPLQTKKPSVV
NPPSGFDAKGVHWLKPTLLAEVAFAEMTKEGSVRHAVFHGLRDDKPAEDITEERAKAVKT
STSKPAAAKTATAKAATAKAAAAKTGAAKTAAEKTASERTAAEKNAPGKTASGKKSTAEK
PATQKKTAEPAPSQIGLGKGKVRITHPDRVIDASSGTTKVQLAEYYASVAEWILPELKDR
PVALVRAPDGIAGELFFQKNAERLAIPGITTLDKALTGQPVMIINNAEALIGAVQMSTVE
LHTWNATSDNLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVLDELGLKAFLKTSGGKGI
HLVVPLTRKLGWDEVKDFSHAIVSHMAKLLPDRFSAVSGPKNRVGRIFIDYLRNGLGATT
ICAYAVRTRDGLPVSMPIFREEVGELKGGNQWNVHNVQERLAEVGDEPWAELKKTRQTIT
AEMRRRVGMKK
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaacctggacgattacaaccgcatgcgcgacttctcggccacttctgaaccg
gccgccaaaccgtcgagcaaaaaaaaagcgcaagaccatgcgctgcaattctgcatccag
aaacatgacgcttcgcgcctgcactacgactttcgcctggaactcgacggcgccctgaaa
agctgggcggtgcccaaggggccgtcactggatcccaaggtcaagcgcctggccgtccat
gtcgaagaccacccgctggactacgccacgttcgagggcagcatccccgaagggcattac
ggcgccggtgacgtgatcgtctgggaccgcggcgtatggattccccaggaggatccggcc
aaggcctacgccaagggcaagctcaagttcgagctgcagggcgagaagctcggcggtctg
tggaacctggtgcgcacgcacatgccgggcaagcaggaacaatggtttttgatcaagcac
caggacggcgcggcgaaacccgagagtgaatacgacgtggtcgtcgccgagcccgatagc
gtgctcagtgatcggactatcctgcctaaaaagtcaaaggccgcggccaagcccaagccg
gtgaaaaaaccggccgcggcggcgcccaaggcacaggcgacgcctttgaccggtgcccgc
aaagccaggctgccggagcagctcaagccggaactggccaccctggtcgagaaggccccg
ggcggcgagtggagctacgagatcaagttcgacggctatcgaatcatggcccgcatcgac
cacggcgaggtccaactgtttacgcgcaatggtcatgactggacccacaagctgccaaaa
caagccgaggccctggcagcgctgggtctcgagtcagcctggcttgatggcgaaatggtg
gtggccgacgaacagggcgtaccagacttccaggccttgcagaatgcgttcgattcgggc
cgcagcggcgccattctttactacctgttcgacatcccctacctcaacggcgtggacctg
cgcgaagtgcccgtcgaggaacgccgggcggcgctggcgacggtactcaacgccaatgaa
gacccgctgctgcggttctccgacgcgtttggcgaagagccggaagccttgctcaacagc
gcctgccaaatgcgcatggaagggctgatcggcaagcgtctggggtcgccctacgtgtcc
cggcgcagcagcgactggatcaagctcaagtgcaagcatcgccaggaattcgtggtggtt
ggcttcaccgatcccaaaggctcgcgcaatgggttcggtgccttgctgctggggctgcat
gaccgggacagcggcgaattgcgctacgcaggcaaggtcggcaccgggttcaacgagacc
acgctcaaacatatccacgagcaactcaaacccctgcagacgaagaaaccgtcggtggtc
aatccgccgagcggcttcgatgccaaaggcgtgcattggcttaagccgacactgctggcg
gaagtggcctttgccgaaatgaccaaggaaggctcggtacgccatgcggtgttccatggc
ctgcgcgatgacaaacctgccgaagacattaccgaggagcgtgcgaaagccgtgaagact
tcaacctcgaaacccgctgctgcgaaaactgccactgcaaaagccgccactgcaaaagct
gcggctgcaaaaactggcgctgcaaaaactgctgcggaaaaaactgcttctgaaagaact
gccgctgaaaaaaacgcccctgggaaaaccgcctctggaaaaaaaagcaccgctgaaaag
ccagccacccaaaagaaaaccgccgaacccgcaccttcacaaatcggcctgggcaagggc
aaggtgcgcatcacccatcctgatcgggtgatcgacgccagcagcggcaccaccaaagtg
caactggccgagtactacgccagcgtcgccgaatggatattgcccgaactcaaggaccgc
ccggtggcactggtgcgcgcccccgacggcatcgccggcgaactgtttttccagaagaac
gccgagcgcctggccattccggggatcaccaccctggacaaggccctgaccggtcaaccg
gtgatgatcatcaacaacgccgaagccctgatcggcgccgtgcagatgagcacggtggag
ctgcacacctggaacgccacctccgacaacctcgacaaacccgaccgcttcgtccttgac
ctcgacccggacccggcgctgccctggaaaagcatggtcgaggcgactcagctgaccctt
tcggtgctcgatgaactcgggctcaaggcatttctcaagaccagcggcggcaagggcatt
cacctggtggtgccgctgacccgcaagctcggctgggacgaggtaaaggacttcagccat
gccatcgtcagccacatggccaaactgctgccggatcgtttttccgcggtctccggcccg
aaaaaccgggtcgggcggatcttcatcgattacctgcgcaacgggctgggcgccactacc
atctgcgcctacgccgtgcggactcgcgacggcttgccggtgtcgatgccgatctttcgc
gaggaggtgggtgagctcaagggtggcaatcagtggaatgtgcacaacgtgcaggagcgg
ctcgcggaagtgggtgacgagccatgggcggagctgaagaaaacccggcagaccatcacc
gcagaaatgcggcggcgggtggggatgaagaagtag
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integrated database retrieval system