Pimelobacter simplex: KR76_09225
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Entry
KR76_09225 CDS
T03528
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psim
Pimelobacter simplex
Pathway
psim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KR76_09225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psim03400
]
KR76_09225
Enzymes [BR:
psim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KR76_09225
DNA repair and recombination proteins [BR:
psim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KR76_09225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Prim-Pol
Mak_N_cap
Big_4
Motif
Other DBs
NCBI-ProteinID:
AIY16897
UniProt:
A0A0A1DJT5
LinkDB
All DBs
Position
1882124..1883041
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AA seq
305 aa
AA seq
DB search
MPKKPEHPQTEVHVDVEGRTMRLTNLQKVLYPSTGTTKGEVLDYYVRVAPVLIPHLVGRP
VTRIRWPHGVGDMSFFEKNAPAGTPSWVRTAEVPTTGSRGPSRHGDTLVFPIIDQLPTLV
WAVNLAALELHVHQWTVDDDGDPVGADRIVIDLDPGEPAGLHECCQVALLVREALAERGY
DALPVTSGSKGLHLYAPLAEALPSSETSEIAKEIAEELAAAHPQQVTATMTKARRRGKVF
LDWSQNAGSKTTVAPYSLRGTTRPQVATPIDWDEVAAGADDPLGLEQFSPSQVLARVEEY
GDLFS
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagaagcccgagcacccccagaccgaggtccacgtcgacgtcgagggccgcacg
atgcggctgaccaacctccagaaggtgctctacccgagcaccggcaccaccaagggcgag
gtgctcgactactacgtgcgggtcgcgcccgtcctgatcccgcacctggtgggacgcccg
gtcacccggatccgctggccgcacggcgtcggcgacatgagcttcttcgagaagaacgcg
ccggccggaacccccagctgggtgcgcaccgccgaggtgccgaccaccggcagccgcggg
ccgagccggcacggcgacaccctcgtcttcccgatcatcgaccagctcccgaccctggtc
tgggcggtcaacctggccgcgctcgagctgcacgtgcaccagtggaccgtcgacgacgac
ggcgatccggtcggcgccgaccggatcgtgatcgacctcgaccccggcgagcccgccggc
ctccacgagtgctgccaggtcgcgctcctggtgcgcgaggccctcgccgagcgcgggtac
gacgccctgccggtcaccagcggcagcaagggactgcacctctacgcgccactcgccgag
gcgctgccgtcgtccgagacgagcgagatcgccaaggagatcgccgaggagctcgccgcc
gcccacccccagcaggtcaccgccacgatgaccaaggcccggcgccgcgggaaggtcttc
ctcgactggtcgcagaacgcgggctcgaagaccaccgtggcgccctactccctgcggggg
acgacacggccccaggtggcgaccccgatcgactgggacgaggtggccgccggcgccgac
gacccgctcgggctcgagcagttctcgccgtcccaggtgctcgcccgggtcgaggagtac
ggcgacctgttcagctag
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