Pseudorhodoplanes sinuspersici: CAK95_22200
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Entry
CAK95_22200 CDS
T04834
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psin
Pseudorhodoplanes sinuspersici
Pathway
psin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CAK95_22200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psin03400
]
CAK95_22200
Enzymes [BR:
psin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CAK95_22200
DNA repair and recombination proteins [BR:
psin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CAK95_22200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARQ01514
UniProt:
A0A1W6ZVW3
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All DBs
Position
4558483..4561182
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AA seq
899 aa
AA seq
DB search
MPRGSLRDYHAKRDFKLTAEPKGVVGKRKSTGLRYLIQKHDASRLHYDFRLEWNGTLLSW
AVPKGPSENPDDKRLAVHVEDHPIEYGDFEGTIPEGQYGGGTVMLWDTGTWEPHEDDVDA
SLKKGKLGFTLYGKRLKGNWALVKLRRRSPKDKDNWLLIKEHDEYERKTGKLTVERETSS
VKSGRAMDEIAAGKTVWQSNRGNGRGSSRGSSEVEEIIAGPARTKSASGSKKKSLSQSSE
KPPSKTSSVGKTSIARLPAFIAPQLATLVEAPPSGNNWLHEIKYDGYRAVAAVAGDKVAI
WTRNALNWTDKFRSLVPALLKLPCESALLDGEIAVADAEGRTDFGALQNALSEGAGRMAY
YLFDLLLLDGKDLRQRPLIERKDILRDLLSSSAGKGPLIYSDHVVGHGEETFAQASKLKL
EGLISKEAGAPYRSGRTRSWLKSKCGFEQEFVIIGWRPSTKAGRPFSSLLLAVREGDHYR
YAGRVGSGYSGAGLESLSKQFKALARKTPPVKDVPPDIARRAKFIEPQLVAEIAFRGWTR
DGLVRQASFKGLRSDKPAKEIVKETPMPTRKVAKAAATSAKKAASKSAPKASSARRKAAA
PRKPVRSSASDGAEQIEGVRVTHPDKVLFAAQDVTKRELIDHYLSIADAMLPHIVDRPIS
LVRCPSGSGGSCFYQKHASDGFPGEFKSISIREKSGTDKYLYIEDERGLIAAVQVGVLEL
HLWCCHVDDVEKPDRLIFDFDPDEGLDFIHVREAAKEMRARLKDLGLESFPMVTGGKGVH
VVAPLKPGHSWDEHREFAEALARVMAEEHPDRFVANMSKAKRKGKIFVDYLRNQRGATAI
CPFSTRARPGAYVAMPVSWQKLARLDNAHPVAVGEAAKFLGRSDPWPGYFKLRQPLPRM
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcggcagccttcgcgactatcacgccaagcgggacttcaagctaacggccgag
ccgaagggcgtcgtcggcaaacgcaagtcgaccggtttgcgctacctgatccagaagcat
gacgcatcacgcctgcattacgatttccggctggaatggaacggcacgctgctgagctgg
gcggtgccgaaaggaccgagcgagaatcccgacgacaagcgtcttgcggtgcatgtcgag
gatcatccgatcgaatatggcgatttcgaaggcacgattcccgaaggacaatatggcggc
ggcacggtgatgctgtgggacaccggcacctgggagccgcatgaagacgatgtcgatgcc
tcgctgaagaagggcaagcttggcttcacattgtatggcaaacggctgaagggaaactgg
gcgctggtgaaacttcgccggcgcagccccaaagacaaggacaattggctgctgatcaag
gagcatgacgaatacgagcgcaagaccggcaagctgacggtcgagcgcgagacgtcgagc
gtgaaatccggccgggcaatggatgagatcgccgccggcaagacggtctggcaatcgaac
cggggaaacgggcgcgggtcttcacgtgggtcttcggaagtcgaagagatcattgcggga
ccggcgagaacgaaaagcgccagcggctcaaaaaaaaagtccttaagtcagtcaagcgaa
aagccgccaagcaaaacatcaagcgtaggcaaaacgtcaatcgcaagactgccggccttc
atagcgccgcagctcgcaacactggtcgaggccccgccaagcggaaataactggctgcac
gaaatcaaatatgacggctatcgcgcggtcgcggcggttgccggcgacaaggtcgcgatc
tggacgcgcaacgcgctgaattggaccgacaaattccggtcgctggtcccggccttgctg
aagcttccctgcgagagcgcattgctggacggcgagatcgccgttgctgatgcggagggc
cgtaccgatttcggggcgctgcagaatgcgctgagcgaaggggcgggccgcatggcctat
tatctcttcgatctgttgcttctcgatgggaaggatttgcgccagcgtccgttgatcgag
cgcaaggacatactgcgcgatcttttgtcatcctcggccggcaagggaccgctgatctat
tccgaccacgtggtcggtcatggcgaagaaacctttgcgcaagcgagcaagctcaagctg
gaaggcctgatctcgaaagaggccggtgcgccgtatcgttcgggccgcacgcggagctgg
ctgaaaagcaaatgcggtttcgagcaggaattcgtcatcatcggctggcggccatcgacc
aaggcaggacggccattctcatccttgctgctggcggtgcgcgagggcgatcattatcgg
tatgccgggcgcgtcggcagcggctattcgggggcaggactcgaaagcctgtcgaagcag
ttcaaggcgctggcgcgcaagacgccgccggtgaaggatgtgccgccggacatcgcgcgg
cgcgcgaagttcatcgaaccgcagctcgtcgccgaaatcgcctttcgcggctggacgcgc
gatggcctcgtccggcaggcgtcgttcaagggattgcgcagcgacaagcccgcaaaagag
atcgtgaaggagacgccgatgccgacacgcaaggtggccaaggctgctgcgacatccgca
aagaaggcggcaagcaagtctgcgccgaaagcgagcagcgcgcggcggaaggcggcggcc
ccgcgcaagcctgtccgttcgtccgccagcgacggtgcagagcaaatcgaaggcgtccgc
gtcacccatcccgataaggtgctgttcgcggcccaggacgtcaccaagcgcgagttgatc
gatcattatctgtcgattgccgatgcgatgctgccgcatattgttgaccggccgatcagc
ctcgtgcgctgtccgagtggcagcggcggatcgtgcttctatcagaagcatgcctcggat
ggctttcccggcgagttcaagtcgatcagcattcgcgagaaatcgggcaccgacaaatat
ctctatatcgaggacgagcgcgggctcatcgccgcggtgcaggtgggcgtgctggaactg
catctgtggtgctgccatgtcgacgatgtcgagaagccggaccggctgatcttcgatttc
gatcccgacgaggggctcgacttcatacatgtcagggaagcggcgaaggagatgcgcgcc
cggctgaaggatctcggtcttgaatccttcccgatggtgacgggcgggaagggcgtgcat
gtggtcgcaccgctcaagcccggccatagctgggacgagcatcgcgaattcgccgaagcg
ctggcgcgggtgatggcggaggagcatcccgaccgtttcgtcgccaacatgtcgaaggcc
aagcgcaagggaaagatcttcgtcgattatctgcgcaaccagcgcggcgcgacggcgatc
tgcccgttctcgacgcgggcgcggccaggtgcctatgtcgcgatgccggtgtcgtggcag
aagctggcccggctcgacaatgcgcatccggtggcggtgggcgaggcggcaaagtttttg
ggccgcagcgatccctggccgggctacttcaagctcaggcagccgctgccgaggatgtag
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