Pseudorhodoplanes sinuspersici: CAK95_23590
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Entry
CAK95_23590 CDS
T04834
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psin
Pseudorhodoplanes sinuspersici
Pathway
psin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CAK95_23590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psin03400
]
CAK95_23590
Enzymes [BR:
psin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CAK95_23590
DNA repair and recombination proteins [BR:
psin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CAK95_23590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
AAA_16
SNF2-rel_dom
UB2H
SecA_DEAD
RecG_dom3_C
GTP-bdg_M
SBP_bac_3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARQ03157
UniProt:
A0A1W7A0M9
LinkDB
All DBs
Position
complement(4847010..4850513)
Genome browser
AA seq
1167 aa
AA seq
DB search
MIKGPAELLRPRKPITLSNVADGAEGLVVADLARAIAARPHAPSVSLLVVCRDATRLAAL
ARGLSFFAPDIERLEFPAWDCLPYDRVSPYAAVLAQRMTTLSRLANVEARDKPSVVLTTV
NAILQRVPARDFVAGKSLSAAPGNVLPMERVASWLELNGYTRASTVREPGDYALRGGILD
LFAPGMDMPVRLDFFGDQLETIRSFDPETQRTQYDLRALDLVPVSEFQLTTETIRRFRLG
YVEAFGAATRDDLLYESVSEGRRYPGMEHWLPLFHDHLDTLLDYLDGTPIALEPLADDVA
HERISLINDYYDARHNVPADAGGVPYKPLPPQRLYLTEEEWRDRLERSKVARLTPFAVPE
QDSVVDIGTRQGHNFAAERAEQNANVFDAVTRHVAGLQRDNKNVVIALWSEGARDRMGHV
LRDHGIANLTNVATWQEALARPRTDVSLAVFGLETGFETDRVAIIGEQDILGDRLVRPRR
VSKRAENFIAEATSLSAGDLVVHVDHGIGRFIGLSTIEAAGAPHDCLELHYAGDTKLYLP
VENIDLLSRYGSEDLEVELDRLGGTGWQTRKARMKNRIREIAHELMKVAAERKLREASRL
TVPEGAYDEFCAGFPYEETEDQQNAIDAAIEDLASGRPMDRLVCGDVGFGKTEVALRAAF
VAAMNGKQVAVVVPTTLLARQHFKTFTERFRGFPIKIGQASRLVSAADMTQTRKALADGT
LDIVVGTHALLGKNVKFKDLALVIVDEEQHFGVAHKEKLKTLRAEVHMLTLTATPIPRTL
QLALTGVRDLSLIASPPVDRLAVRTFVSPFDPLGVREAILRERYRGGQSFYVCPRIEDLA
GAKEFFDKAVPEVKVAVAHGQMPPTMLEDIMSAFYDGKFDVLISTTIVESGLDIPTANTL
IVHRADRFGLAQMYQLRGRVGRSKIRAYALFTLPAEKRITAQAERRLKVLQSLDTLGAGF
QLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVTSLKAGITEPVADQWSPQIT
VGTPVLIPDDYVADLSVRLGLYRRIATVENEQEIESFAAEMVDRFGPLPDEVKHLMQIVV
IKLLSKRANVERIDTGQKGAVLQFRDNSFANPEGLMRYIASQAPIAKVRPDQKVVFLDDW
PKPVQRLLGTTKILRNLVKIAENQKAA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagggcccggccgagctgctgcggccacgcaagccgatcacgctgtcgaatgtc
gctgacggcgccgaagggctggttgttgccgatctcgcgcgcgccatcgcggcgcggccg
catgcgccgtcggtcagtcttctggtggtgtgccgcgacgcgacgcgtctggctgcgctg
gcccgcggcctgtcattcttcgcccccgatatcgagcggcttgaattccccgcctgggac
tgtctgccgtatgaccgtgtgtcgccgtatgcggccgtgctggcgcagcgcatgacgacg
ctatcgcgactcgccaatgtcgaggcccgcgacaagccatcggtggtgctgaccacggtc
aacgcaatcctgcagcgtgtgccggcgcgcgacttcgtcgccgggaaatcgctgtcggcg
gcgccgggcaatgtgcttcccatggaacgcgtggcgagctggcttgaactgaacggctat
acccgggcctcgacggtgcgcgagccgggcgattatgcgctacgcggcggcattctcgat
ctctttgcgccgggcatggacatgccggtgcggctcgacttcttcggcgatcagctcgaa
acgatccgctccttcgatcccgaaacgcagcgcacgcaatacgatctgcgcgcgcttgat
ctcgtgccggtgtcggaattccagctcacgactgaaaccatccgccgcttccggctgggc
tatgtcgaagccttcggcgccgcgacccgggacgacctgctctatgaatcggtcagcgaa
ggccgccgctatcccggcatggagcattggttgccgctgttccacgaccacctcgatacg
ctgctcgattatctcgatggcaccccgatcgcgctggaaccgctcgccgacgatgtcgcg
catgagcggatcagcctgatcaacgactattacgatgcgcgccacaatgtgccggccgat
gccggcggcgtgccatacaagccgctgccgccgcagcggctctatctcaccgaagaggaa
tggcgcgacaggctggagcgatcgaaggtcgcaaggctgacgccgttcgctgtgcccgaa
caggattctgttgtcgatatcggtacgcggcaggggcataacttcgcggccgagcgcgcc
gagcagaatgccaatgtgttcgacgccgtgacgaggcatgtcgcagggctgcagcgcgac
aacaagaatgtggtcatcgcgctgtggagcgagggcgcacgcgatcgcatggggcacgtg
ctgcgcgaccacggcattgccaacctgaccaatgtggccacctggcaggaggctttggcg
cggccgaggacggatgtgtcgctggccgtgttcggcctcgaaaccggtttcgagactgac
cgggtcgcgatcattggcgagcaggatatcctcggcgatcgtctggtgcggccgcgccgg
gtctcgaaacgcgcggagaacttcatcgccgaggcgaccagcctgtcggccggcgatctc
gtcgtccatgtcgatcacggcatcggccgcttcatcggcctctcgaccatcgaggcggcg
ggtgcgccgcatgattgcctcgagctgcattatgccggcgacaccaagctgtacctgccg
gtcgagaatatcgacctgttgtcgcgctacggctcggaagacttggaagtcgaactcgac
cgcctcggcggcaccggatggcagacgcgcaaggcgcggatgaagaaccgcatccgcgag
atcgcccatgaactgatgaaagtggcggccgagcgcaagctgcgtgaggcttcgaggctc
accgtacccgaaggcgcctatgacgaattctgcgccggcttcccttatgaggaaaccgag
gatcagcagaatgcgatcgatgcggcgatcgaggacctcgcttcgggtcggccgatggac
cggctggtttgcggcgatgtcggcttcggcaagaccgaagtggcgctgcgcgcggccttt
gtcgcggcgatgaacggcaagcaggttgcggtcgtcgtgccgacgacattgctggcgcgc
cagcacttcaagacgttcactgaacgcttccgcggcttcccgatcaagatcggtcaggcc
tcccgcctggtgagcgccgcggatatgacgcagacccgcaaggcgctcgccgatggcacg
ctcgacattgtggtcggcacccatgcgctgctgggcaagaacgtgaaattcaaggacctg
gcgctggtcatcgtcgacgaggagcagcatttcggcgttgcgcacaaggagaagctgaag
acgctgcgcgctgaagtgcacatgctgacgctgaccgcgacgccgatcccacgtaccttg
caacttgcgctgaccggcgtgcgcgatctgtcgctgatcgcatcgcctccggtcgatcgt
cttgcggttcgtaccttcgtttcgccattcgatccactcggggtgcgcgaggcgatcctg
cgcgaacgctatcgcggcggccagtccttctacgtctgcccacgcatcgaggatctggcc
ggtgcgaaggaattcttcgacaaggcggtgcctgaggtgaaggtcgcggtcgcgcatggc
cagatgccgccgaccatgctggaagacatcatgtcggctttctatgacggcaagttcgac
gtgctgatctcgaccaccattgtcgaatccggtctcgacattccgaccgccaatacgctg
atcgtgcatcgggccgaccggtttggtcttgcgcagatgtatcagttgcgcggccgtgtc
ggacgctcgaagatccgcgcttatgcattgttcacgctgccggccgagaagcgcatcacc
gcgcaggcggagcggcggctgaaggtgctgcaatcgctcgacacgctgggtgcgggcttt
cagctcgcctcgcacgatctcgacatccgtggtgccggcaatctgctcggcgaggagcaa
tcgggtcacatcaaggaagtcggtttcgagctgtatcagcagatgctggaggaggcggtc
acgagcctcaaagccggcatcaccgagccggtggccgatcagtggtcgccgcagatcacc
gtcggtacaccggtgctcatccccgacgactatgtcgccgatctgtcggtgcggcttggt
ctctatcgtcgtatcgcgaccgttgagaacgagcaggagatcgaaagcttcgcggccgag
atggtcgatcgcttcggtccgctgccggacgaggtcaagcatctcatgcagatcgtggtg
atcaagctcttgtcgaagcgcgccaatgtcgagcgcatcgacaccggccagaagggtgcg
gttctgcaattccgcgacaacagcttcgccaatccggaaggcttgatgcgttacatcgcg
agccaggcgccgatcgccaaggtgcggccggaccagaaggtcgtgttcctggatgactgg
ccaaagccggtgcagcgtctgctcgggacgaccaaaatcctgcgcaacctggtgaagatc
gcggagaaccagaaggcggcgtga
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