Phocoena sinus (vaquita): 116743046
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Entry
116743046 CDS
T07759
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116743046 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116743046 (LIG4)
Enzymes [BR:
psiu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116743046 (LIG4)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116743046 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
116743046
NCBI-ProteinID:
XP_032467048
Ensembl:
ENSPSNG00000015489
LinkDB
All DBs
Position
18:complement(75804561..75812399)
Genome browser
AA seq
911 aa
AA seq
DB search
MAASQTSQTVASHVPFADLCSTLERIQKSKGRAEKIRHFKELLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIANNNSAQRKDLVKKSLLQLITQSSA
LEQKWLIRMILKDLKLGFTRETVFAVFHNDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLASIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYRYFSRNGYNYED
QFGSSPQEGSLTPFIHNAFKTDVQNCILDGEMMAYNPNTQTFMQKGSKFDIKRMVEDSDL
HTCYCVFDVLMVNDKKLGQETLRKRYEILNSVFTPIPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGILIKHPLSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGSRGGMM
SHFLCAVSEKPPPGEKPSVFHTLCRVGSGYTKKELYDLGLKLAQHWKPFHRKAPPSCILC
GTEKPEVYIEPWNSVIVQVKATEIVPSGMYKTGCTLRFPRIENIRENKEWHECTSLEDLE
QLRGKASGKLASKHLYVGDDDEPQEKKRKAAPKMKKVIGIIEHLKAPNLSNINKVSNIFE
DVEFCVMSGTKSHPKPDLENRIAEFGGYVVQNPGPDTYCVIAGCENIRVKNIISSDKHDV
VKPEWLLECLETKSCVPWQPRFMTHMCPSTKQHFAREYDCYGDSYFVDTDWNQLKEVFSG
IKNAGEQTPREMDPVIADLEHRYSWDNTPLSMFRHHTVFLDLYTVINDLSTKIEGARLAV
TALELQFHGAKVVSCLAEGVSHVIIGEDQSRLADFKAFRRTLKRKFKILQERWVTESIDK
RELQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaaacttcacagactgttgcatctcacgttccttttgcagatttatgt
tcaactttagaacgaatacagaaaagtaaaggacgtgcagaaaaaatcagacacttcaaa
gaacttttagattcttggagaaagtttcatgatgcccttcataagaaccaaaaagatgtc
acagattctttttatccagccatgagacttattcttcctcagctggaaagagagagaatg
gcctatggcatcaaagaaactatgcttgctaagctttatattgaattgcttaacttacct
cgagaaggaaaagatgccctcaaacttctaaactacagaacacctaccggaactcgtgga
gatgctggagactttgcgatgattgcatactttgtgttgaaacccagatgtttacagaag
ggaagtttaaccatacagcaagtaaatgaccttttagactccattgccaacaataattct
gcccaaaggaaggacctagtaaagaagagtcttcttcagcttataactcagagttcagca
cttgaacaaaagtggctgatacggatgattttaaaggacttgaagcttggctttactcgg
gaaactgtatttgctgtctttcataatgatgctgctgagttgcataatgtcaccacagat
ctggaaaaggtctgtaggcaactgcatgatccttcagttggactcagtgacatttctatc
actttattctctgcatttaaacccatgctggcctctatagcagatatcgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctggacggtgagcgtatgcag
atgcacaaggatggggacgtgtatcggtacttctcccgcaacggctataactatgaggat
cagtttggctcttccccacaggaaggttcccttacaccgttcatccataatgcattcaaa
acagatgttcaaaactgtatcctcgatggtgagatgatggcctacaaccctaatacacaa
acttttatgcagaaggggagtaagtttgatattaaaagaatggtcgaagattctgatctg
cacacttgttactgtgtttttgatgtattgatggttaatgataaaaagctaggacaggag
acactgagaaagaggtatgaaattcttaatagtgtttttacaccaataccaggtagaata
gaaatagtgcaaaagacacaagctcatactaagaaagaagtaattgatgctctgaatgaa
gcaatagataaaagagaagaggggatcctgataaaacatcctctgtccatttacaagcca
gataagagaggtgaagggtggttaaaaattaaaccagagtatgtagatgggctgatggat
gaactggacatcttaatcgtggggggctactgggggaaaggttcccggggtggaatgatg
tctcattttttgtgtgcggtgtcagagaaaccccctcctggtgaaaaaccatcagtgttt
catactctctgtcgcgttggctcaggttacaccaagaaagaactgtatgacctgggtttg
aagttggcccaacactggaagccttttcataggaaagctccaccaagttgcattttatgt
ggaacagagaagccagaggtctacatcgaaccttggaattcggtcatcgttcaggttaag
gccacagagattgtccccagtggtatgtataaaactggctgcacgttgcgttttccacga
attgagaacataagagaaaacaaagaatggcacgaatgtacatctctggaggacttagaa
caacttcgagggaaagcctctggaaagctcgcatctaaacacctttatgtgggtgacgat
gatgaaccacaagaaaaaaagcggaaagctgccccaaagatgaagaaagttattggaatt
attgagcacctaaaagcacccaacctctctaacataaacaaagtttctaatatatttgaa
gatgtggagttttgtgtcatgagtggaaccaagagccatccgaagcccgatctggagaac
agaatcgccgaattcggtggttacgtagtccaaaatccaggcccagacacatactgtgtg
atcgcagggtgtgagaacattcgagtgaaaaacatcatctcttctgataaacacgacgtc
gtcaagcccgagtggctgttagagtgtttagagaccaaaagctgtgtgccgtggcagcct
cgcttcatgactcacatgtgcccgtccacaaaacagcactttgctcgggaatacgactgc
tacggggatagttactttgtcgatacagattggaaccaactgaaggaagtgttctcggga
attaaaaatgctggtgaacagactcctagggaaatggatcctgtgattgccgatttggaa
caccggtattcctgggacaacactcctcttagcatgtttcgacaccacaccgtttttttg
gacttgtatactgttattaatgacctaagtactaaaatcgagggggcaagattagctgtc
acagccctggagcttcaatttcatggagcaaaagtagtttcatgcttagctgagggagtg
tctcatgtcatcattggggaggatcagagtcggcttgcagactttaaagcttttcgaaga
actctgaagagaaagtttaaaatcctacaagaacgttgggtgactgaatcaatagacaag
agggaattacaggaggaaaatcaatatttgctttga
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