Phocoena sinus (vaquita): 116743628
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Entry
116743628 CDS
T07759
Symbol
CYLD
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase CYLD isoform X1
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04064
NF-kappa B signaling pathway
psiu04217
Necroptosis
psiu04380
Osteoclast differentiation
psiu04622
RIG-I-like receptor signaling pathway
psiu04625
C-type lectin receptor signaling pathway
psiu04668
TNF signaling pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
116743628 (CYLD)
04668 TNF signaling pathway
116743628 (CYLD)
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
116743628 (CYLD)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
116743628 (CYLD)
04625 C-type lectin receptor signaling pathway
116743628 (CYLD)
09158 Development and regeneration
04380 Osteoclast differentiation
116743628 (CYLD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psiu01002
]
116743628 (CYLD)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116743628 (CYLD)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
116743628 (CYLD)
Peptidases and inhibitors [BR:
psiu01002
]
Cysteine peptidases
Family C67
116743628 (CYLD)
Ubiquitin system [BR:
psiu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
116743628 (CYLD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CYLD_phos_site
CAP_GLY
UCH
COX_ARM
Motif
Other DBs
NCBI-GeneID:
116743628
NCBI-ProteinID:
XP_032468186
Ensembl:
ENSPSNG00000015466
LinkDB
All DBs
Position
19:25931949..25994176
Genome browser
AA seq
953 aa
AA seq
DB search
MSSGLWSQEKVTSPYWEERIFYLLLQECSVTDKQTQKLLKVPKGSIGQYIQDRSVGHSRL
PSTKGKKNQIGLKILEQPHAVLFVDEKDVVEINEKFTELLLAITNCEERFSLFKNRNRLS
KGLQIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGI
YQGKQLFQCDEDCGVFVALDKLELIEDDDTGLESDYAGPVDTMQVELPPLEINSRVSLKL
GETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFASVESTILLHIN
DIIPDSVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRSELFYTLNGSSV
DSQPQSKSKNSWYIDEVAEDPAKSLTEISPDFGHASPPLQPPSMNSLSSENRFHSLPFSL
TKMPNTNGSISHSPLSLSVQSVMGELNNAPVQESPPLAVSSGNSHGLEVGSLAEVKENPP
FYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDS
RFASLQPVSNQIERCNSLAFGGYLSEVVEENTPPKMEKEGLEIMIGKKKGIQGHYNSCYL
DSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLRIYGYVCATKIMKLR
KILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRSAGQKVQDCYFYQIFMEKNE
KVGVPTIQQLLEWSFINSNLKFAEAPSCLIIQMPRFGKDFKLFKKIFPSLELNITDLLED
TPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKD
LPDWDWRHGCIPRQKMELFAVLCIETSHYVAFVKYGKDDSAWLFFDSMADRDGGQNGFNI
PQVTPCPEVGEYLKMSLEDLHSLDSRRIQGCARRLLCDAYMCMYQSPTMSLYK
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgggcttatggagccaagaaaaagttacttcaccctactgggaagagcggatt
ttttatttgcttcttcaagaatgcagtgttacagacaaacaaacacaaaaactccttaaa
gtaccaaaggggagtataggacagtatatccaagaccgttctgtggggcattcaaggctt
ccttctacaaaaggcaagaaaaatcagattggattaaaaattttagagcaaccacatgca
gttctgtttgttgatgaaaaggatgttgtagaaataaatgaaaaattcacagagttactt
ttggcaattaccaattgtgaagagaggttcagcctgtttaaaaacagaaacagactaagt
aaaggcctccaaatagatgtgggctgccctgtgaaagtccagctgagatctggggaagaa
aaatttcctggagttgtacgcttcagaggacccttattagcagagaggacagtatcggga
atattctttggagtagaattactggaagaaggtcgtggccaaggtttcactgatgggata
tatcaagggaaacagctttttcagtgtgatgaagattgtggagtatttgttgcattggac
aagctagaactcatagaagatgatgacactggattggaaagtgattatgcaggtccagtg
gacacaatgcaagttgagcttccccctctggaaataaactccagagtttctttgaagctt
ggagaaactatagaatctggaacagttatattctgtgatgttttgccaggcaaagaaagc
ttaggatattttgtaggtgtggacatggataatcctattggcaactgggatggaagattt
gatggagtacagctttgtagttttgcaagtgttgaaagtacaattctcttgcatatcaat
gatatcatcccagatagcgttacacaggaaaggaggcctcccaaactagcctttatgtca
agaggtgttggggacaaaggttcatccagtcataataaaccaaaggctacaggatctacc
tcagaccctggaaatagaaacagatctgaattattttataccttaaatgggtcttctgtt
gactcacaaccacaatccaaatcaaaaaattcatggtatattgatgaagttgctgaagac
cctgcaaaatcgcttacggagatctctccagactttggacacgcttcaccaccactgcaa
cctccttccatgaactcactatccagcgagaacagatttcattctttaccatttagtctg
acaaagatgcccaacaccaatggaagtattagccacagtccgctctctctgtcagttcag
tctgtgatgggagagctaaacaatgcacctgtgcaggagagtccacccttggccgtatct
tctggtaactcacacggcctggaagtgggctcgctggccgaggttaaagagaatcctcct
ttctatggggtaatccgttggattggtcagccgccaggactcaatgaagtactggctgga
ctggaactggaagacgagtgtgcaggctgtacagatggaacctttaggggtactcggtat
ttcacctgtgccctgaagaaggcactgtttgttaaactgaagagctgccggccagactct
aggtttgcgtccctgcagccagtttccaatcagatcgaacgctgtaactctttagcattt
ggaggctacttaagtgaagtagtagaagaaaatactccaccaaaaatggaaaaagaaggt
ttagagataatgattggaaagaagaaaggtatccagggtcattacaattcttgttactta
gactcaaccttattctgcttgtttgcttttagttctgttctggacactgtgttacttaga
cccaaagaaaagaatgatgtagaatattatagtgaaactcaagagctgctgaggacagaa
atcgttaatcctctgagaatatatggatatgtatgtgcaacaaagattatgaaactgagg
aaaatacttgaaaaagttgaggctgcatcaggatttacctctgaagaaaaagatcctgaa
gaattcttgaatattctgtttcatcatattttaagggtagaaccattgttaaagataaga
tcagcaggtcagaaagttcaagattgttacttctatcagatttttatggaaaaaaatgag
aaagttggagttcctacaattcagcaattattagaatggtcttttatcaacagcaacctg
aaatttgctgaggcaccatcatgtctgattattcagatgcctcgatttggaaaagacttt
aaactatttaaaaaaatttttccttctctggaattaaatataacagatttacttgaagac
acccctaggcagtgccggatatgtggagggctcgcaatgtatgagtgtagagaatgctac
gatgaccctgacatctcagctggaaaaatcaagcagttttgtaaaacctgcaacactcaa
gtccaccttcatcccaagaggctgaatcataaatataacccagtgtcacttcccaaagat
ttacctgactgggattggagacacggctgcatcccccgtcagaagatggagttgtttgct
gtcctctgcatagaaacaagccactatgtcgcttttgtgaagtacgggaaagacgactct
gcctggctcttctttgacagcatggctgatcgggatggtggtcagaatggcttcaacatt
cctcaggttaccccatgcccagaagtaggagagtacttgaaaatgtctctagaagatctg
cattccttggactccagaagaatccaaggatgtgcacgaagacttctttgtgatgcatac
atgtgcatgtaccagagtccaacaatgagtttgtacaaataa
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