Phocoena sinus (vaquita): 116749477
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Entry
116749477 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: G/T mismatch-specific thymine DNA glycosylase-like
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116749477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116749477
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
116749477
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
116749477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
MCAfunc
Motif
Other DBs
NCBI-GeneID:
116749477
NCBI-ProteinID:
XP_032479752
LinkDB
All DBs
Position
2:149871053..149872271
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AA seq
406 aa
AA seq
DB search
MEAEDAGSYSLQQAQAFYTFPFQRKITEVPSMALMNEQEMPAEVPAPAPAQEPTQETPKG
RKGKPKTTEPKTPVEPKKPAEAKKSGKSTKSEEKQEKITDTFKVXKVDQFNSVSEAELLT
KTLLDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKWLFMSGLSEVQLNHMDDHTL
PGKXGIGFTNRVPRVTPGSKDLSGKEFCEGGRILVQKLQKYQPRIAVFNGNCIYEIFSRE
VFGVKVKNLELGLQLHKTPDTETLCYVMPSSSARCAQFPRAQDKVHYYVKLKDLGDQLKV
SERNTDIQEVQYTFDLWLAQEDAKKMAVKEEKYDLGYEAACGGAYSENPCSSEPCSFSSN
GLTADSGESTFSDIPEGQWMTQSFTDHIPSFNNHCAMQEQEEGNHA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggaggacgcaggcagctattccctccagcaagcgcaagctttttatacgttt
ccattccagcgaaagatcactgaagttcctagtatggcacttatgaatgaacaagaaatg
ccagcagaagttccagccccagctcctgctcaggaacccacacaagagactccaaaagga
aggaaaggaaaacccaaaacaacagaaccaaaaactccagtggaacccaaaaaacctgct
gaggccaaaaaatctggcaagtccacaaaatcagaagaaaagcaagaaaaaattacagac
acatttaaagtgnnaaaagtagaccagttcaatagtgtttcagaagctgaacttttgacc
aagactctactggacattttgaccttcaatctggacattgtgattattggcataaaccca
ggactaatggctgcttacaaagggcatcattaccctggacctggaaaccatttttggaag
tggctgtttatgtcagggctgagtgaggtccaactgaatcacatggatgatcacacttta
ccagggaaatagggtattggatttaccaatagggtgccaagggtaacaccaggcagcaag
gatctttccggtaaagaattttgtgaaggaggacgtattctagtgcagaaattacagaaa
tatcagccacgaatagcagtgtttaatggaaactgtatttatgaaatttttagtagggaa
gtttttggagtaaaagttaagaacttagaattaggacttcaactgcataagaccccagac
acagaaactctctgctatgttatgccatcatccagtgcaagatgtgctcagtttcctcga
gcccaggacaaagttcattattacgttaagctgaaggacttaggagatcagttgaaagtc
agtgagcgaaacacagacattcaagaggtgcaatatacattcgacctgtggctagcccaa
gaggatgcaaagaagatggctgtgaaggaagaaaaatatgatctgggttatgaagcagcg
tgcggtggtgcttatagtgaaaatccatgcagtagtgaaccttgcagcttctcttcaaat
gggctgacagctgacagtggagaatcaactttcagtgacattccagaagggcagtggatg
acccagtcatttacagaccacattccctcctttaataatcactgtgcaatgcaagaacag
gaagaaggaaaccatgcttaa
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