Phocoena sinus (vaquita): 116751848
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Entry
116751848 CDS
T07759
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03022
Basal transcription factors
psiu03420
Nucleotide excision repair
psiu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116751848
09124 Replication and repair
03420 Nucleotide excision repair
116751848
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
116751848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116751848
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116751848
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116751848
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116751848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
VWA_3
Motif
Other DBs
NCBI-GeneID:
116751848
NCBI-ProteinID:
XP_032484124
Ensembl:
ENSPSNG00000008003
LinkDB
All DBs
Position
3:complement(117522936..117543482)
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNSRKHIISLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQDIPLEEHNGERFCYACQGELKDQHVYVC
TVCQNVFCVDCDIFVHDSLHCCPGCIHKIPAPSAI
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggagcctgaaagaactaagcgatgggaaggaggctatgaaagaacatgggag
attcttaaagaagatgaatcaggatcacttaaagctacaatagaagacattctcttcaaa
gcaaagagaaaaagggtatttgagcaccatggacaagttcgacttggaatgatgcgccat
ctttatgtggtagtagatggatcaagaacaatggaagaccaggatttaaagcccaataga
ctgacatgtactttaaagttgttggaatacttcgtggaggaatattttgatcaaaatcct
attagtcagattggaataattgtaacaaagagtaaaagagctgaaaaactgactgaactc
tcaggaaactcaaggaaacacataatatctttgaagaaagctgtagatatgacttgccat
ggagagccatctctttataactccttaagcatggctatgcagactctaaaacacatgccc
ggacatacaagtagagaagtcctaatcatctttagcagtctcacaacctgtgatccatct
aatatctatgatctaatcaagaccctaaaggcagctaaaattagagtgtctgttattgga
ttgtctgcagaggttcgggtttgcactgtgcttgctcgtgaaactggtggcacataccat
gttattttagatgaaagccattacaaagaattgctgacacatcatgttagtcctcctcct
gctagctcaagctctgaatgctcacttattcgtatgggatttcctcagcataccattgct
tctctgtctgatcaagatgcaaaaccctctttcagtatggcgcatctggatagcaacact
gagccaggacttacgttaggaggctatttctgcccacagtgtcgggcaaagtactgtgag
cttcctgttgaatgtaaaatctgtggtcttactttggtgtctgctccccacttggcacgg
tcttaccatcacttatttcctttggatgcttttcaagatattcccctggaagaacataat
ggagaaagattttgttatgcctgtcagggggaattgaaagaccaacatgtctatgtttgc
actgtgtgccaaaatgttttttgtgtggactgtgatatttttgttcatgactctctccat
tgttgtcctggctgtattcataagattccagctccttcagctatttga
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