Phocoena sinus (vaquita): 116762128
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Entry
116762128 CDS
T07759
Symbol
SCN10A
Name
(RefSeq) sodium channel protein type 10 subunit alpha
KO
K04842
voltage-gated sodium channel type X alpha
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116762128 (SCN10A)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116762128 (SCN10A)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
GPHH
CcmD_alt
Na_trans_cytopl
IQ
Motif
Other DBs
NCBI-GeneID:
116762128
NCBI-ProteinID:
XP_032504779
Ensembl:
ENSPSNG00000008847
LinkDB
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Position
11:complement(42836441..42914209)
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AA seq
1965 aa
AA seq
DB search
MEFPSGSLETTNFHRFTPESLVEIEKRIAAKQEAKKAKEKSKKQKDQEEKTRPQLDLKAC
NQLPKFYGELPAELVGEPLEDLDPFYSTHRTFMVLNKGRTISRFSATRALWLFSPFNLIR
RTAIKVSVHSYPLWFSLFITITILVNCVGMTQTELPERMEYVFTVIYTFEALIKILARGF
CLNEFTYLRDPWNWLDFSVITLAYVGEAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVG
ALIHSVRKLADVTILTIFCLSVFALVGLQLFKGNLKNKCVKNCTVVNETANYSSHEKREW
NFCHRDPDFYTNKPGTSDPLLCGNGSDSGHCPEGYFCLKTSDNPDFNYTSFDSFAWAFLS
LFRLMTQDSWERLYQQTLRASGKIYMFFFVLVIFLGSFYLVNLILAVVTMAYEEQNQATT
DEIEAKEKKFQEALQMLWTEQEVLAALGVDTASLHSHNGSPLASKNASVRRHRMKPRVSE
GSTDDNKSPQTESYNEHRMSFLGLTSGRHQASHGSVFHFQAPGRDISFPDGVTDDGVFPG
DYQSHRGSLLLGRDASQQGPLPSSPLPQTPSPGLGHGEDGPPTLPTGELAPGAIEVSVSD
AGQKTYLTAEYLNEPLRTQRAMSVVSIMTSVLEELEESKQRCPPCLTSLARKYLIWDCCP
TWVKLKTLLFATVTDPFAELTITLCIVVNTIFMAMEHYGMSPAFEAMLQIGNIVFTVFFT
AEMVFKIIAFDPYYYFQKKWNIFDCIIVTVSLIELGAVRKGSLTVLRTFRLLRVFKLAKS
WPTLNTLIKIIGNSVGALGNLTIILAIIVFVFALVGKQLLGDNYRDNRRKISAPNEEWPR
WHMHDFFHSFLIVFRILCGEWIENMWACMEVGQKSICLILFLTVMVLGNLVVLNLFIALL
LNSFSTDNLTAPEDDGEVNNLQVALARIQVLGRRIKKALCSFLNWPFLLPRPKAEPQLVV
KLPLSTSKAENHITADTAAGSPGGLLAPGGPRDDHSDFITNPNIWVSVPIAEGESDLDDL
EDDGEEDAQSTQQEVIPQGQQEQRPQVGRYEDHLPPRSSGSGMSSEDLAPYLGEKWKDEA
PAQGPTEGVDDTSSSEGSTVDCLDLGEILRKIPELADDLDEPDDCFTEGCIRHCPCCKVN
SSKFPWAMGWQVRKTCYVIVEHSWFESFIIFMILLSSGALAFEDFYLDQKPTVKALLEYT
DRVFTFIFVFEMLLKWVAYGFKSYFTNAWCWLDFLIVNISLTSLIAKVLQYSDMASIKAL
RTLRALRPLRALSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFQK
CINKTSEGFLLVPWTTVNNMSDCERQNHTGSFFWVNVKVNFDNVAMGYLALLQVATFKGW
MDIMYAAVDSREVNMQPKWEDNVYMYLYFIIFIIFGSFFTLNLFVGVIIDNFNQQKKKLG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKYQGFVFDIVTRQTFDVIIMVLICLN
MITMMVETDEQSEEKTKILNKINQFFVAVFMGECVMKMFALRHYYFTNGWNVFDLIVVVL
SIGSLVFSAILTSLGNLFSPTLFRVIRLARIGRILRLIRGAKGIRTLLFALMMSLPALFN
IGLLLFLVMFIYSIFGMANFAYVKWEAGIDDMFNFQTFANSMLCLFQITTSAGWDGLLSP
ILNTGPPYCDPNLPNSNGTRGDCGNPIVGILFFTTYIIISFLIVVNMYIAVILENFNVAT
KESTEPLSEDDFDMFYETWEKFDPEATQFITFSALSDFADTLSGPLRIPKPNGNILIQMD
LPLVPGDKIHCLDILFTFTKNVLGESGELDSLKANMEEKFMATNLSKASYEPIATTLRWK
QEDISATVIQKAYRSYVLHRSMTIANPLPVPRAEEEAVSLPDEGFVAFVANENCVLPDKS
ETASATSFPPSYDSVTRGLSDQVNLSTSSSIQNEGEAATKEATGP
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggaattcccctctgggtctctggaaactaccaacttccatcgattcaccccagagtct
ctggtggagattgaaaaacgaattgctgctaagcaggaggcaaagaaagccaaagagaag
tccaagaaacagaaggaccaggaagagaagactcggccccagcttgacttgaaagcatgt
aaccagctgcccaagttctatggtgagctcccagcagagctggtcggggagccactggag
gatctggaccccttctacagcacacaccggacatttatggtgctgaacaaagggaggacc
atttcccggtttagtgccactcgggccctgtggttattcagtcctttcaacctgatcaga
agaacagccatcaaagtgtctgtccactcatatcctttgtggttcagtttatttataacc
atcactattttggtcaattgtgtgggcatgacccaaaccgaacttccagagagaatggag
tatgtcttcactgtcatttatacctttgaagccttgataaagatactggcaagaggattt
tgtctaaatgagttcacttacctgcgagatccttggaactggctggattttagtgtcatc
accctggcgtatgttggtgaagccatagatctccgagggatctcaggcctgcggacgttc
agagtccttagagctttaaaaacagtgtctgtgatcccagggctgaaggtcatcgtggga
gccctgatccactcggtgaggaagctggctgacgtgaccatcctcaccatcttctgcctg
agtgtctttgccctggtgggcctgcagctcttcaagggcaacctcaagaacaaatgtgtc
aagaattgcacagttgtcaacgagacggccaattactcttctcatgaaaaacgggagtgg
aatttctgtcatagggacccagatttctacaccaacaaaccaggcacttctgatccctta
ctgtgtggcaatggatctgattcaggccactgccctgaaggttatttctgccttaaaaca
tctgacaacccagattttaactataccagctttgactcctttgcttgggctttcctctca
ctgttccgcctcatgacacaggattcctgggaacgcctctaccagcagaccctgagggct
tctgggaaaatctatatgttttttttcgtgcttgttatcttcctggggtctttctacctg
gtcaatttgattttggctgtggtcaccatggcatatgaggagcagaaccaggcaaccact
gatgaaattgaagccaaggagaagaagttccaggaggcccttcagatgctctggacggag
caggaggtgctggcagccctgggggttgacacagcctctctccactcccacaatggatcc
cctttggcctccaaaaacgccagtgtgagaaggcacagaatgaagccaagggtgtcagag
ggctccacagatgataacaagtcaccccagactgagtcttacaacgagcacagaatgtct
ttcctaggcctcacctcggggagacaccaggctagccatggaagtgtgttccatttccag
gcccctggccgagacatctcattccctgatggggtcacagatgatggagtctttcctgga
gactatcaaagccatcggggctctctgctgctgggtagggatgcaagccagcaaggcccc
ctccctagcagtccactgcctcaaactcccagccctggcttagggcatggagaagatgga
cccccaacattgcccactggtgagcttgcccctggagccatcgaagtctcggtatctgat
gcaggacagaagacttacttgacagcagaatacttgaatgaacctctccgaacccaaagg
gcaatgagtgttgtcagtatcatgacctctgtcctcgaggaactcgaggagtctaaacag
aggtgcccaccctgcttgaccagcttggctcggaagtatctgatctgggattgctgcccc
acgtgggtgaagcttaagacccttctcttcgcgactgtgacagacccctttgcagagctc
acaatcaccctgtgcattgtggtgaacaccatcttcatggccatggagcactacggcatg
agtcccgctttcgaagccatgcttcagattggcaacattgtctttaccgtgttttttact
gctgaaatggtcttcaaaatcatagcgttcgatccctactattacttccagaagaagtgg
aacatctttgattgcatcatcgtcacagtgagcctgatagagctgggtgcggtcaggaag
gggagcctgacagtgctgcggaccttccgcctgttgcgggtcttcaagctggccaagtca
tggccgaccttaaacacgctcatcaagatcatcggcaactcggtgggggctctggggaac
ctcaccatcatcctggccatcattgtcttcgtctttgctctggttggcaagcagctcctc
ggggacaactaccgtgacaaccggcgcaaaatctcagcacctaacgaagaatggccacgc
tggcacatgcacgacttcttccactccttcctcattgtcttccggatcctctgtggagag
tggattgagaacatgtgggcctgcatggaagtcggccagaagtccatctgcctcatcctt
ttcttgacggttatggtgctgggcaacctggtggtgcttaacctgttcattgccctgctg
ctgaactccttcagcaccgacaacctcacagccccagaggacgacggggaggtgaacaac
ctgcaggtggccctagcgaggatccaggtgttaggccggcgcatcaagaaggccctttgc
agcttcctcaactggcccttcttgctcccccggcccaaggcagagccccagctggtggtg
aaactcccactctccacctccaaagctgagaaccacattactgctgacacggctgcgggg
agccctggagggctcctggctcccggaggccccagggatgaccacagtgacttcatcacc
aatcctaacatatgggtctctgtgcccattgccgagggcgagtctgacctcgatgacttg
gaggatgatggtgaggaggatgctcagagcacccagcaggaagtgatcccccaagggcag
caggagcagcggccacaagtcgggagatatgaggaccacctgccacccaggagctcaggt
tctggaatgtcctctgaggacctggctccatacctaggtgagaagtggaaagacgaggct
cctgctcagggccctacagagggagtggacgacacgagctcctctgaaggcagcactgtg
gactgcctggatcttggggagatcctgaggaagatccctgagctggcggatgacctcgat
gagccagatgactgcttcacagaaggctgcattcgccactgtccttgctgtaaagtgaac
agctccaagtttccatgggccatgggctggcaggtgcgcaagacctgctacgtcattgtg
gagcacagctggttcgagagctttatcatcttcatgatcctgctcagcagtggagcgctg
gcctttgaagatttttaccttgaccagaagcccacggttaaggccttgctggagtacacc
gacagggtgttcacgtttatctttgtgtttgagatgctgctcaaatgggtggcctatggc
tttaaaagttacttcaccaatgcctggtgctggctggacttcctcatcgtgaacatctca
ctgacaagccttatagcgaaggtgctgcagtattctgatatggcatccatcaaagccctt
cggaccctccgtgccctgcggccactgcgggccctgtctcgatttgaaggcatgcgggtg
gtggtagatgccctggtaggcgccatcccctccatcatgaacgtcctcctcgtctgcctc
atcttctggctcatcttcagcatcatgggtgtgaacctcttcgcagggaagtttcagaaa
tgcatcaacaagaccagtgaaggcttccttcttgtgccttggactactgtgaataacatg
tctgactgtgaacgtcaaaaccacactggaagcttcttttgggtcaatgtgaaggtcaac
tttgataatgttgcaatgggctacctcgcacttctgcaggtggcaacctttaaaggctgg
atggacatcatgtacgcagctgtcgattcccgggaagtgaacatgcagcccaagtgggag
gacaacgtgtacatgtacttgtacttcatcatcttcatcatttttggcagcttcttcaca
ctcaatctcttcgttggggtcatcattgacaacttcaaccaacagaaaaaaaagttaggg
ggccaggacatctttatgacagaggagcagaagaagtactacaatgccatgaagaaactg
ggctccaagaagccccagaagcccatcccacggcccctgaacaagtaccagggctttgtc
tttgacatcgtgaccaggcagactttcgacgtcatcatcatggtcctcatctgcctcaac
atgatcaccatgatggtggagactgacgagcagagtgaagaaaagacaaaaatcctaaac
aaaatcaaccagttctttgtggccgtcttcatgggcgagtgtgtcatgaagatgttcgcc
ttgaggcattactacttcaccaatggctggaatgtatttgacttaattgtcgtggtcctc
tccattggaagcctggtgttttctgcaattcttacatcgcttggaaatttattctcccca
acgctcttccgagtcatccgcctggcccggatcggccgcatcctcaggctgatccgtggg
gccaagggcatccgcacgctgctcttcgcgctcatgatgtccctgcccgccctcttcaac
attgggctgctgctcttcctggtcatgttcatctactccatcttcggcatggccaacttc
gcctacgtcaagtgggaggctggcattgatgacatgttcaacttccagaccttcgccaac
agcatgctgtgcctcttccagatcaccacgtcggcaggctgggacgggcttctcagcccc
atcctcaacacggggcctccctactgcgaccccaacctgcccaacagcaacggcactaga
ggggactgtgggaaccccatcgtgggcatcctcttcttcactacctacatcatcatctcc
ttcctcatcgtggtcaacatgtacattgcggtgattctggaaaacttcaatgtggccacg
aaggagagtacggagcccctgagcgaggatgactttgacatgttctacgagacttgggag
aagttcgacccggaggccacccagttcattaccttctctgccctctcagactttgcagac
acgctctctggccccctgcggatcccaaaacccaatgggaatatattaatccagatggac
ttgcccttggtccctggagataaaatccactgtttggacatcctgtttaccttcaccaag
aatgttctgggagaatctggggagttggattctctgaaggcaaatatggaggagaaattt
atggcaactaatctttcaaaagcatcctatgaaccaatagcaaccaccctccggtggaag
caagaagacatttcagccactgtcattcaaaaggcctatcgcagctacgtgctgcaccgc
tccatgacgatcgccaatcccctgcctgtgcccagggctgaggaggaggctgtgtcactc
ccagatgaaggctttgttgcattcgtggcaaatgaaaactgtgtgctcccagacaaatct
gaaactgcctctgccacatctttcccaccatcctacgacagtgtcactagaggccttagt
gatcaagtcaacttaagcacgtctagctcgatacaaaacgaaggggaggctgccactaag
gaagccactgggccctag
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