Phocoena sinus (vaquita): 116763621
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Entry
116763621 CDS
T07759
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04120
Ubiquitin mediated proteolysis
psiu04137
Mitophagy - animal
psiu04141
Protein processing in endoplasmic reticulum
psiu05012
Parkinson disease
psiu05014
Amyotrophic lateral sclerosis
psiu05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116763621 (PRKN)
04120 Ubiquitin mediated proteolysis
116763621 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116763621 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
116763621 (PRKN)
05014 Amyotrophic lateral sclerosis
116763621 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
116763621 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116763621 (PRKN)
04121 Ubiquitin system [BR:
psiu04121
]
116763621 (PRKN)
03029 Mitochondrial biogenesis [BR:
psiu03029
]
116763621 (PRKN)
Enzymes [BR:
psiu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
116763621 (PRKN)
Membrane trafficking [BR:
psiu04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
116763621 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
116763621 (PRKN)
Xenophagy
Other xenophagy associated proteins
116763621 (PRKN)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
116763621 (PRKN)
Mitochondrial biogenesis [BR:
psiu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
116763621 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Rad60-SLD_2
Dsc3_N
Crinkler
Motif
Other DBs
NCBI-GeneID:
116763621
NCBI-ProteinID:
XP_032507498
Ensembl:
ENSPSNG00000015749
LinkDB
All DBs
Position
12:5741195..7025669
Genome browser
AA seq
465 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLTVRSCD
LDQQSIVHIVLRPQRKVPERNTAGGDSPQNAAGGSEREPESLTRVDLSSSVLPADSVGLA
IILKDDNENGGPPAGRPAGRPTYNSFFVYCKGPCQGVQPGKLRVRCSTCQQATLTLAQGP
SRWEDVLIANQMSGECQSPNCPGTRAEFFFKCGAHPTSDQETSVALNLITTNSRDITCIT
CMDIRSPVLVFQCNYRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKE
LHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPSPGCGAGLLPEPSQRKVTCEGGSGLGC
GFIFCRDCKEPYHEGECSALFEASGTVTQAYRVDEKTAERARWEHASKETIKKTSKPCPR
CHVPVEKHGGCMHMKCPQPQCQLEWCWNCGLEWNRACMGDHWFDV
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgtcaggttcaactccagccatggtttcccagtggaggtcgattctgac
accagcatcttccagctcaaggaggtggttgctaagcgacagggggttccagctgaccag
ttgcgtgtgattttcgcagggaaggagctgaggaatgacttgacagtgcggagctgtgac
ctggatcagcagagcatcgttcacattgtgctgagaccccagagaaaagtcccagaaagg
aacacagctggaggggacagcccacagaacgctgcggggggctctgagagggagcctgag
agcctaactcgggtggacctcagcagctctgtcctcccagccgactcagtgggtctggct
attattctgaaggatgacaacgagaatggtggcccaccagctggaaggccagcaggtaga
ccaacctacaacagcttttttgtgtactgcaaaggcccctgtcaaggagtgcagccagga
aagctcagggtgcggtgcagcacctgtcaacaagcgacgctcaccttggcccagggtcct
tctcgctgggaagatgtcttaatcgcaaaccagatgagtggtgaatgccagtctccaaac
tgccctgggactagagcagaatttttctttaaatgtggagcacacccgacctctgaccag
gaaacgtcagtagctttgaacctgatcacaacaaatagtcgagacatcacctgcataaca
tgtatggacatcagaagcccggtcctggttttccagtgcaactaccgccacgtgatttgc
ttagactgtttccacctgtactgtgtgacgagactcaatgatcggcagtttgtccacgac
cctcagcttggttactctctaccttgtgtggctggctgccccaactccttgattaaagag
ctccatcacttcaggattcttggagaagagcagtacaaccggtaccagcaatatggtgcc
gaagagtgcgtgctacagatggggggcgtgctgtgccccagcccgggctgcggagcaggg
ctgcttcctgagcccagccagaggaaggtcacctgcgaagggggcagcggcctgggctgc
gggttcatcttttgccgggattgtaaggaaccgtaccatgaaggtgaatgcagtgccctg
tttgaagcctcaggaacagttactcaggcctaccgagttgatgagaagacggcagagcgg
gctcggtgggagcatgcctccaaagaaacgatcaagaagacctctaaaccctgtccccgt
tgccacgtgccggtggaaaaacatggagggtgcatgcacatgaagtgcccgcagccccag
tgccagctcgagtggtgctggaactgcggcttggagtggaaccgcgcctgcatgggggac
cactggttcgacgtgtag
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