Phocoena sinus (vaquita): 116764280
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Entry
116764280 CDS
T07759
Symbol
TGFBRAP1
Name
(RefSeq) LOW QUALITY PROTEIN: transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116764280 (TGFBRAP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116764280 (TGFBRAP1)
Membrane trafficking [BR:
psiu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116764280 (TGFBRAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Motif
Other DBs
NCBI-GeneID:
116764280
NCBI-ProteinID:
XP_032508622
Ensembl:
ENSPSNG00000009765
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All DBs
Position
13:complement(88158079..88202548)
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AA seq
858 aa
AA seq
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MMSTKAFTLVPAVEREQLMGDREWVSLECVECCGRNLYVGTSDCFVYHFLLEEKTVPGGS
ATFTATKQLHRHLGFKKPVNELRAASALHRLLVLCDGSITLVHMLSLEPVPSGARIKGAT
AFALNENPVSGDPFCVEVCIISVKRRTIQVFLVYEDRVQIVREVSTPEQPLAVAVDGHFL
CLALTTQYIILNYSTGVAQDLFPFCSEEKRPIVKRIGRQEFLLAGPGGLGMFATVAGISQ
RAPVHWSENVVGAAVCFPYVIALDSEFITVHSMLDQQQKQTLPFKEGHILQDFEGRLIVA
TSKGVYVLVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRVLQQAGFIQ
FAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEFADLNQLTQGDQEK
VAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYTEADHDSLLDLLVTENFCLLTDSA
AWLEKHKKYFALGLLYHYNHQDAAAVQLWVSIVNGDIHDSTRSDLYEYIVDFLTYSLDPD
LVWAYADWVLQKNPEVGVQVFTKRPVDEQSRFNPDDVISCLKKYPQALVKYLEHLVVDRR
LEKEGYHTHLAVLYLDEVLQQRPSASGKDAEVTETQAKLRRLLQQSDLYQVHFLLDRIRG
AGLPMENAILLGKLEQHEGALRILVHELADFPAAEGYCLWRSEGRAPPYRRRLFQLLLAI
YLGPGPSAPELAVAAVDLLNRRATEFDAAQVLQLLPGTWSVQLLCPFLTGAVRDSVHARR
TTQVAMGLAKSENLIYKYDKMKLKGSSVRLSDKKLCQMCRNPFCEPVFVRYPNGGLVHTH
CAASRHTNPSSPSPGART
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcaccaaggcgttcaccctggtccccgccgttgagcgggagcagctgatgggc
gacagggaatgggtgtcattggagtgtgtggagtgctgcggccggaacctgtacgtgggc
accagcgactgcttcgtgtaccacttcctgctggaggagaagaccgtgcccggtgggtcg
gccacgttcacggccaccaagcagctgcacagacacctgggtttcaagaagccggtgaat
gagctgcgggcggcgtcggccctccaccggctgctggtgctctgtgacggctccatcacc
ctggtccacatgctgagcctggagcccgtgccctcgggtgcccgcatcaagggggccacg
gccttcgccttgaatgagaacccggtgagcggagaccccttctgcgtggaggtctgcatc
atctccgtcaagcgcagaaccatccaggtgttcctggtgtacgaggaccgcgtgcagatc
gtcagggaggtgtccactccggagcagcccctggcagtggcggtggacggccacttcctg
tgcctggccctgaccacgcagtacatcatcctcaactatagcacgggcgtcgcccaggac
ctgtttcctttctgcagcgaggagaagcggcccatcgtcaagaggatagggagacaggag
ttcctcctggcaggccccggcggattgggcatgtttgccacggtggccgggatatctcag
cgcgcgcccgtgcactggtcagagaacgtggttggagcagccgtctgcttcccatacgtc
attgccctcgacagcgagttcatcaccgttcacagcatgctggaccaacagcaaaagcag
accctgccctttaaggaaggtcacatcctccaggattttgaaggaagactgatcgtcgcc
acaagtaaaggagtttacgtcttggttccgttacctctagaaaaacaaatacaggatctt
ctagcaagccggagagtggaggaggctctggttctagcaaaaggcgcccggaggaacatt
ccaaaggaaaaatttcaggtcatgtaccggcgggtcctgcagcaggcgggcttcatacag
tttgcgcagcttcagttcctggaggctaaagaactcttcagaagcggccaactcgacgtg
cgggagctgatctccctgtaccccttcctgctgcccacgtcctcctcgttcacccggtcc
caccctcctctgcacgagtttgcagacctcaaccagctgacccagggcgaccaggagaag
gtggccaagtgcaagcgcttcctcatgagctacctgaacgaggtccgcagcacggaggtg
gccaacggctacaaggaggacatcgacacggccctgctcaagctgtacacggaggctgac
cacgacagcctgctggacctcctggtcaccgagaacttctgtctgctcaccgacagcgcc
gcctggctggaaaagcacaaaaagtactttgcactggggctgctctatcattacaaccac
caagacgctgctgccgttcagctgtgggtgagcatcgtcaacggggatattcacgactcc
acgcgctcagacctgtacgagtacatcgtggatttccttacctacagcctcgacccggac
cttgtgtgggcatatgctgactgggtcttgcagaaaaatccggaggtcggagttcaggtt
ttcaccaagagacctgtggacgaacagagtaggtttaacccagatgatgtcatcagttgc
cttaagaaatacccgcaagccctggtcaagtacctagaacatctggtcgtggacaggaga
ctggagaaggaggggtaccacacgcacttagccgtcctctacctggacgaggtgctgcaa
cagaggcccagcgccagtggcaaggatgcagaagtgaccgagacgcaggcgaagctacga
cgtctgctccagcaatccgatttgtaccaggtccactttctgctggacaggatccggggc
gccgggctccccatggagaacgccatcctgctcgggaagctggagcagcatgagggggcc
ctgcgcatcctggtccacgagctggccgacttcccggcagccgagggctactgcctgtgg
cgctccgagggccgggccccgccgtaccgccggcggctcttccagctcctgctggccatc
tacctgggccccggcccctctgcgcccgagctggccgtggccgccgtggacctcctgaac
cgccgtgccaccgagttcgacgcggcccaggtcctgcagctgttgccgggcacgtggtcg
gtgcagctgctctgcccgttcctgacgggggccgtgcgggacagcgtccacgcccggagg
accacgcaggtggctatgggcctggccaagtcagaaaacttgatctacaagtacgacaag
atgaagctgaaaggaagctcagttcggctctcggacaaaaagctttgccagatgtgccga
aacccattttgcgagcccgtgtttgttaggtatcccaacggtggtctcgtccacacccac
tgtgcggccagcaggcacacgaaccccagctcccccagccccggggctcggacttga
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