Pseudomonas sp. TKP: U771_15340
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Entry
U771_15340 CDS
T02969
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psk
Pseudomonas sp. TKP
Pathway
psk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
U771_15340 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psk03400
]
U771_15340 (ligD)
Enzymes [BR:
psk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
U771_15340 (ligD)
DNA repair and recombination proteins [BR:
psk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
U771_15340 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHC35593
LinkDB
All DBs
Position
complement(3327354..3329858)
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AA seq
834 aa
AA seq
DB search
MAKPLSEYHRKRDFEITGEPAGDSKPNKRQASALAFVIQKHDARSLHYDFRLELDGVLKS
WAIPKGPSLDPSQKRLAVHVEDHPLSYGSFEGSIPAGQYGAGDVIVWDRGVWQPHGDPQK
AYAAGKLKFTLVGEKLAGDWTLVRTRLKGSGDKQQWLLIKEQDQQARPSSDYDIVQAQPR
SVLSEASVGTPTTAAKPSAKKASRKKTLALPDQFAPQLATLVDRAPEGNWLYEIKFDGYR
MLARIRDGEVRLFTRNGHDWTDRLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQ
NAFDIGRSLDIVYYLFDAPFLEGRDQRQDPLEKRRAALKAALARSKSKLLRFSEAFAANQ
HDIFESARDLALEGVIGKRAGSPYVSSRNTDWIKLKCRLRQEFVIVGYTRPQGSRSGFGA
LLLAVNGDAGLVYAGRVGTGFDRAALQDIYARLTPLQRKTSPLDKPLTRAQARGVHWVEP
QLVGEVRFAEWTREGVVRQAAFVALRSDKPVEQIIHEQPRAAKSLQAPTARKSGAPSTVA
GVKITHPERIIDQHSGTQKLQLAQFYDSISRWILPFLHHRPVALLRALEGVGGEQFFQKH
TERLAIPHLQQLDPALDPGHARLMEIDSTAALVGAVQMGTVELHTWGATSDKIETPDLFV
LDLDPDPALPWKTMLEAAQLTLSVLDELGLQAFIKTSGGKGLHLVVPLARRDDWDTVKAF
AKAIAQFMTQQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPV
SRDELKGLRGAQQWTVANLHERLQGLKDNPWAGYANRQKISKRMWDKLGATPPE
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacccttgagcgaataccaccgaaagcgcgatttcgagatcactggcgaacct
gcgggtgactcgaaacccaacaagcgccaggcatcggcgttggcgttcgtgattcaaaag
cacgatgcgcgcagcctgcattacgactttcgcctggaactcgacggggtactcaagagc
tgggcaatacccaagggccccagcctggaccccagccagaaacgcctggccgtgcatgtc
gaggatcaccccttgagctacggcagtttcgagggcagcatcccggcgggccaatatggc
gccggcgatgtgatcgtatgggatcgcggcgtctggcaaccccatggcgatccgcaaaaa
gcctacgccgccggcaagctgaaattcaccctggtcggggagaaactcgccggcgactgg
accctggtgcgtacccgcctcaaaggcagcggcgataagcaacaatggctgctgatcaag
gaacaggatcagcaggcacgcccgagcagcgactacgatatcgtccaggcacagccccgg
agcgtgctcagtgaggcatcggtgggcacgccgacgaccgccgccaaaccctccgcgaaa
aaagcctcacgcaagaaaacgctcgccctgcccgatcaattcgcgcctcaactggccacc
ttggtcgaccgcgcaccggagggtaactggctctacgaaatcaagttcgacggctaccgc
atgttggcgcgtattcgtgacggcgaagtgcgcctgttcacgcgcaacggccatgattgg
actgaccgcttgccgcgccaggccaaggccctgcaagccctgaaactcaaggacagctgg
ctcgacggcgaagtggtcagcctcaatggcgatggcttgccggatttccaggccctgcaa
aacgccttcgatatcggacgcagcctggacattgtctattacctgttcgacgcgccgttt
ctagaaggccgcgatcaacggcaagacccgctggaaaaacgccgcgctgcgctcaaggcg
gccttggcccgtagcaagagcaaactgttacgtttctccgaggcgtttgccgccaaccaa
cacgatatcttcgaaagcgcccgcgacctggcattggaaggcgtgatcggcaagcgtgcg
ggtagcccctatgtatccagtcgcaacaccgactggatcaagctcaaatgccgtctgcgc
caggagttcgtgattgtcgggtacacccgcccccagggttcgcgcagcgggtttggcgcg
ctgttactggcggtcaacggcgatgccgggctggtctatgccgggcgtgtcggcaccggg
tttgatcgggccgctctgcaggacatctacgcccggcttacgccgctgcagcgcaagact
tcacccctggacaagccactgacccgcgcccaggcccgcggcgtgcattgggtggagccg
caattggtcggcgaggtgcgatttgccgagtggacccgtgaaggcgtggtacgccaggcc
gcgtttgtcgcgctgcgttctgataaaccggtggaacagatcattcatgagcagccacgc
gcggccaaatcgctgcaagcaccaacggcccggaagtccggcgcgcccagcaccgtcgcc
ggggtgaagattacccacccggagcggatcatcgatcagcacagcggcacgcaaaaactg
caactggcgcagttctacgacagcatcagccgttggatcctgcccttcctgcaccatcgc
cctgtggcattgctccgtgccctggaaggtgtggggggcgagcagttcttccagaagcac
acagagcgcctggcgatcccgcatctccagcaactggacccggcgttggaccccggtcat
gcccgcctgatggaaatcgacagcaccgccgccctggtgggcgcggtgcagatgggcacc
gtggagctgcacacctggggcgccacctcggacaagatcgagaccccagacctgtttgtg
ctcgatctcgacccggaccccgcactgccgtggaaaaccatgctggaagcggcgcaactg
accttatcggtgctggatgaattgggtctgcaggcctttatcaagaccagtggcggcaag
ggtttgcacctggttgtaccattggcacgccgcgacgattgggacaccgtaaaagccttc
gccaaggccatcgcccagttcatgacccagcaactgccggagcgctttaccgccacgtca
gggccgaaaaaccgcgtcggcaagattttcatcgattacctgcgtaatgcccgtggcgcc
agcacggtcgcggcctactcggttcgggcacgacccggcctgccggtatcggtgccggtc
agccgtgacgaattgaaagggttgcgcggtgcccagcagtggacggtggccaacctgcac
gaacgcttgcagggtttgaaggacaacccgtgggcgggttatgccaatcgacagaagatc
agcaagaggatgtgggacaagctgggcgcgactccacctgagtga
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