Pseudomonas sp. TKP: U771_29990
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Entry
U771_29990 CDS
T02969
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
psk
Pseudomonas sp. TKP
Pathway
psk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U771_29990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psk03400
]
U771_29990
Enzymes [BR:
psk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
U771_29990
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
U771_29990
DNA repair and recombination proteins [BR:
psk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
U771_29990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AHC38461
LinkDB
All DBs
Position
complement(6560758..6561570)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRERRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSQD
PHNHELLLRLGPEPLTELFDGERLFQLSRGKSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGGISRGRYLKLAIEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGEACKVCGSELRNVVLGQRASVFCPKCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttacctgaagtcgaaaccacccggcgcgggatcgcgccgcacctggaaggc
cagcgggtcagccgcgtcgtggtgcgcgaacggcgcctgcgctggccgatcccggaagac
ctggatgtgcgcctgtccgggcagcgcatcgtgctggtggaacgacgggccaagtacctg
ttgatcaacgccgaagtgggcaccttgatcagccacctgggcatgtccggtaacctgcgc
ttggtggaggtcggcatgccggcggccaagcatgagcatgtggacatcgagcttgaatcc
ggcctggccctgcgttacaccgaccctcggcgtttcggcgcaatgctctggagccaggac
ccgcataaccacgaactgctgctgcgcctggggccggagccgttgaccgagctgttcgac
ggtgagcgtttgtttcaactgtctcgcggcaagtcgatggcggtgaaaccgttcatcatg
gacaacgcggtggtggtcggcgtgggcaatatctatgcgactgaggcgttgtttgcggcg
gggattgatccgcgtcgcgccgccggcggcatttcacgcgggcgttatttgaagctggcg
atcgagatcaagcgcattctggcggcggcgatcgagcgtggcggcaccacgttgcgcgac
tttatcggcggtgacgggcagccggggtatttccagcaggaattgttcgtctacggccgg
ggtggcgaggcgtgcaaggtctgtgggagcgaattgcgcaacgtggtgctggggcaacgg
gcgagtgtgttttgccccaagtgccagagttga
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