Pirellula staleyi: Psta_1929
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Entry
Psta_1929 CDS
T01147
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psl
Pirellula staleyi
Pathway
psl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Psta_1929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psl03400
]
Psta_1929
Enzymes [BR:
psl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Psta_1929
DNA repair and recombination proteins [BR:
psl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Psta_1929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
DehI
UB2H
IstB_IS21
DBI_PRT
DUF2664
Motif
Other DBs
NCBI-ProteinID:
ADB16603
UniProt:
D2R0K5
LinkDB
All DBs
Position
2456797..2460060
Genome browser
AA seq
1087 aa
AA seq
DB search
MTAVLPTDTEAAEKLRRLPGRIAQLAGFAEVVAAMSRHEPATIDGVWGSSCALLAAALAS
ADNSPVIAVLPTQREADDLAIDIALFRSQGILPLPSFESAIVAELGRDDAFGPRLRTLKE
LLVARENPRAAATLQQLVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEH
GYEATTSVQLPGEFCHRGGIIDLFAHDWQRPARIELFDDEVESIRQFDVATQRSLGALDW
VEITAIPAANLAGGVIADYLPPNSRILLFSPDRLSDEGRALHARSTAEAQLMSVAEVLSS
LSSFGIATADGIAAGSLGVPWHMPVESVEQFSGDLTKVRDQLGDLAGDHEVMIITPTEAE
VQRLREIFATTSLAATGRLSYVIGTLREGFRVPDEKLIIITGGELFHRGELRRLPRRRLG
KAIDSFLDLREGDLVVHLAHGIGRFAGIKLLERGETSEEHLEIEFDGGTRIYVPAVRIDL
VQKYVGGTKTRPSLAKIGGKTWLKQKKAAESAVADLAVEMLELQAMRSARPGIAFSADSE
WQKEFDNSFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAMRAAFKAVDN
GYQVAVLVPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQEEREALKGIKSGKVDIVV
GTHRLASQDVDFHNLGLVIIDEEQRFGVDVKERLKALKATVDVLTLSATPIPRTLHMSLV
GVRDISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNRVNDIEIIARR
LNQIVPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNANTIFINEA
ERYGLADLHQLRGRVGRYKNRAHCYLLIDSNKSITPNAARRLRAIEEFSEMGAGFQISMR
DLEIRGAGNLLGTQQSGHIAAVGYELYCQLLENAVRSLQRQPPKQQLAVDLNLPGEAFLP
SDYVDDMRLKIDLYRRLSRVGSPTELADFRSELVDRFGEPPPPVEHLLMLTGLKIDAMLW
SVSSIYIEDQFVVLRGDAPVRLAQLAKTQKGRLRLVDERHIYLPLPKKSMPTAELYELIK
TMLQPGK
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgacggcagtgctgcccaccgataccgaggcggccgagaagctgcgcaggcttcctggc
cggattgctcagctcgctggatttgcggaggttgtggccgcgatgtcgcgccacgagccc
gccacgatcgacggcgtgtggggatcgtcgtgcgcgcttttggcagcggccttggcatca
gccgacaattctcccgttatcgcagtactccccacgcagcgcgaggccgacgatctagcg
atcgatattgctctgtttcgctcgcaagggatactgccgctgccgagcttcgaatcggcg
attgtggcagaactggggcgcgacgacgctttcgggccacgcctgcgaacgctgaaagag
ttgctcgtcgctcgcgagaatccacgcgccgccgccacgctgcagcaactggtggtgacg
agcattcactcgctgctgcagccgatgccccagcgcgaggtcctcgcggcaagttcgcgg
cgggtccgaaaacaagaatcgctcgagatcgatccgttcctgcggtggctggtcgaacat
ggctacgaagcgaccaccagcgtgcagttgccgggggaattttgtcatcggggcggcatc
atcgatttgttcgctcacgactggcagcgtccagcgcgcattgaactgttcgacgacgaa
gtcgagtcgattcgccagttcgatgtggcgacgcagcgtagcttgggagctctcgattgg
gtcgaaatcaccgcgataccggctgctaatctcgcgggtggggtgattgccgactatctc
ccgccaaacagccgaattttgcttttttctcccgatcgcctgagcgatgaaggccgcgcg
ctccacgctcgcagcacggcggaagcgcagctgatgagtgtggccgaggtgctcagcagc
ttgagttcgtttggcatcgccacagccgatggcattgcggctggttcgcttggcgtgcca
tggcacatgccggtagagagcgtcgagcaattcagtggcgatttgacgaaggtgcgcgat
caactcggcgatttggccggtgatcacgaggtgatgatcatcaccccgaccgaagctgag
gtgcagcgtctgcgggagattttcgcgactaccagtctcgcagcgaccggtcggctgagc
tacgtcattggcacgctgcgcgaagggtttcgcgttccggacgagaagctcatcatcatc
accggcggagagctatttcatcggggcgagctacgccgtttgccacgtcgtcggctcgga
aaagcgatcgacagcttcctcgacctgcgcgagggagacctggtagttcatctcgcgcat
ggcatcgggcgatttgcggggattaaacttctcgagcgtggtgaaacgagcgaagagcat
cttgaaatcgaattcgatggtggcacgcggatctatgtccctgcggtgcgcatcgatctc
gttcaaaaatatgtcggtggcacgaaaacacgcccctcgctcgcaaaaattggcgggaaa
acctggcttaagcaaaagaaagctgccgagtcggcggtggccgatctcgcggtcgaaatg
ctcgagctgcaagcgatgcgcagcgctcgccctgggatcgcattcagtgccgatagcgag
tggcaaaaggagttcgataactcgtttccgtttcaagagaccgtcgatcagctgacatcg
attgcgtcgatcaaagccgacatgcagcgagcgcgtccgatggaccggctcctgtgcggc
gatgtgggatttggcaaaaccgaagtggcgatgcgggcagccttcaaggcggtcgataac
ggctaccaagtggcggtgctggtgccgacaaccatcctggccgaacagcactaccgtagc
ttcatcgagcgcatggccgagtttccctgcgatattgcgaagctcagtcgcttctgcacg
tcgcaggaagaacgcgaggcgctcaaaggtattaagagtggcaaggtcgatatcgtggtg
gggacacatcgtctcgcttcgcaggacgttgatttccacaacttggggctagtgatcatc
gacgaagagcagcgttttggtgtcgacgtaaaagagcggctgaaggcgctcaaagcgacg
gtggatgtcctcacgttgtcggcaacaccgattccacgcacgctgcatatgtcgctcgtg
ggggtccgcgatatttcgaatctcgagtctcctcctgaagatcgagtgccggtcgaaacg
tctgtcaaacgctggaataacgacctgattcgcaccgcagtgctacgcgaactcaatcgg
gggggacagatttattttgtccataaccgcgtgaatgatattgagatcatcgcgcgacgt
ttgaatcaaattgttcccgaagcttcgctccggatcggtcatggacagatgaacgagacc
gagctcgagcaagtgatggtcgactttgtcgcggggaagttcgatctgctcctcgccacc
accatcgtggagagtgggctcgatattcccaacgccaatacgattttcatcaacgaggct
gagcgctacggactagccgacctgcatcagctgcggggacgtgtggggcgctataaaaat
cgagcccactgctatctgctgatcgattccaataagtcgatcacccccaacgcagcacgg
cgcttgcgggcaattgaagagttcagcgaaatgggggccggttttcagatttcgatgcgc
gaccttgaaatccggggtgctggcaatttgcttggcacgcagcagagtgggcacatcgcc
gcggtggggtatgaactctattgtcagctgctcgagaatgccgttcggtcgctgcagcgt
cagccaccgaagcagcagctagcagtcgacctgaatctgccgggcgaggcgtttttgcca
tccgattacgtcgacgacatgcggctgaagatcgatctttatcgacggttgtcgcgcgta
ggttcgccgaccgagctggctgatttccgcagcgaattggtcgatcgctttggcgagccg
ccaccgccggtcgagcatttgctgatgctcacgggactaaaaatcgacgcgatgctctgg
agtgtttcgtcgatctatatcgaagatcagtttgtggtgctgcggggggatgctccggtg
cggctagctcagctagcaaagacacaaaaggggcgtttgcgactcgtcgacgagcggcat
atctatttgccactcccgaagaaatcgatgccaacagccgaactttacgaactgataaaa
acgatgttgcagccggggaagtag
DBGET
integrated database retrieval system
