Pseudoalteromonas sp. SM9913: PSM_A1057
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Entry
PSM_A1057 CDS
T01374
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, cold shock protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psm
Pseudoalteromonas sp. SM9913
Pathway
psm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSM_A1057 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psm03019
]
PSM_A1057 (deaD)
03009 Ribosome biogenesis [BR:
psm03009
]
PSM_A1057 (deaD)
Enzymes [BR:
psm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSM_A1057 (deaD)
Messenger RNA biogenesis [BR:
psm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSM_A1057 (deaD)
Ribosome biogenesis [BR:
psm03009
]
Prokaryotic type
rRNA helicases
PSM_A1057 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADT68000
LinkDB
All DBs
Position
I:complement(1122939..1124762)
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AA seq
607 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHTRGVEVLALYGGQSYSIQLSA
LRRGAQIIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVENIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNAHVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNVVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKVVEEKRINALQEKLTLALENKDITFFNEVAANMAQKLELAPEDLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNPRSNDRGRRNERGGERAERKPRERNSRD
AGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDSHSTVQLPQNMPKDVL
DHFQKVFICKRPMGMTLTQDQGPSEPRGERSERPAGDKKRSFNKDGQRPDKRSGPRKERR
PVSFTAK
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttaaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagcacaaacgggtacaggtaaaacagcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacccgtgagcttgcgatccaagtagctgaggcatttgaacaatatgcaaaacacact
cgtggtgttgaagtactggcactatatggtggccagagctacagcatccagttgagcgca
cttcgtcgtggcgcacagattattgttgctacaccgggtcgtttaatcgatcacataaac
cgtggcactatcaagtttgatgctttacaagcacttgtacttgatgaagccgatgaaatg
ctacgtatgggctttatcgatgatgttgaaaacatcatggaaaaaacgccgcgtgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaaatat
atgaacaaccctgaacaggttcatatttctgcacgcaactcaactgtatcgtcagtagag
caagtgttttggaatgcacacgtacataaaaacaaagccattgttcgtttcttagaagca
gaacaatatgaaggtgctattgttttcgtacgtacacgtaacgatacagtgcaactagct
gagttattagagcgcgaaggtttctctgctgctccacttaacggtgacatgaaccagcaa
gcgcgtgagcgcacagttgatcgtttaaaaagcggcatgctaaacgttgttattgcaaca
gacgtagcggcacgtggtcttgatgtagaccgtttaagcttagttatcaactacgacatt
ccacaagactctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcgattcttttcgttaagcataacgagcgttacttacttaaaaatatcattcgt
catactaaatctgaaatcgcacaagttgaattacctacagctaaagttgttgaagaaaaa
cgtatcaatgccttacaagaaaagcttacgcttgctcttgaaaacaaagatattactttc
ttcaatgaagtggctgctaacatggcacaaaaacttgagcttgctcctgaagacttagcg
ggtgcgttactgtgtttagcacagcaacaatcaccaattaaagttgaagaagttaagatt
caaccgcgtgagcgtaacgaacgtaatgatcgtaatcctcgtagcaatgaccgtggtcgt
cgtaacgaacgcggtggtgagcgcgctgagcgtaaaccacgcgagcgcaacagccgtgat
gcaggccctatggatacataccgaatcgaagtaggtcgtgagcatggtgttcaggttaag
aacattgttggcgcaattgctaacgaagcagacatttcaagcaagtttatcggtgacatt
cgtcttcacgacagtcacagtacggtacaattaccgcaaaacatgcctaaagatgtactt
gatcacttccagaaagtgtttatttgtaaacgcccaatgggtatgacattaacacaagat
caaggcccttctgagccacgcggcgagcgttctgaacgccctgctggtgacaagaagcgt
agctttaataaagatggtcaacgccctgataagcgtagcggccctcgtaaagaacgtcgc
ccagttagctttaccgctaagtaa
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