Pseudopedobacter saltans: Pedsa_3317
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Entry
Pedsa_3317 CDS
T01430
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psn
Pseudopedobacter saltans
Pathway
psn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pedsa_3317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psn03400
]
Pedsa_3317
Enzymes [BR:
psn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pedsa_3317
DNA repair and recombination proteins [BR:
psn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pedsa_3317
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADY53852
UniProt:
F0SCK8
LinkDB
All DBs
Position
3935926..3939276
Genome browser
AA seq
1116 aa
AA seq
DB search
MNIKDILNSYKEDVRVGELIKELNLPKSRIHLKGLIGSQDAFVAATSYFLNHRSVVFVLP
DREEANFFLSDLENLTEKEILLFPSSYRKSADFTQVDSSNVLLRAEVLNELSHATEYGKL
IVTYPEAVAEKVIDRSALEKNTLEITINNKLSIDFINEFLIEYDFERTDFVYEPGQFSIR
GGIVDIFSFSNELPYRIEFFGDHIESIRTFEIESQLSVEQVKTVTVVPNVQSKFLTESNI
SLLEFIDQDSVIWFKDIQFSMDIVKSGYKKATELWRALSVADKEKNPEWIDPKYAFVDEK
LFSDQLRDFQVVEFGKQFFYSETKSITFDSKPQPSFNKDFNLLVHNLKENEKAGVKNYIL
TDSGKQQERIFSILGDIDRDLRFVPLHVSIREGFIDYEQKIACYTDHQIFDRYYKYKLRR
GYTKSQAITLKELRDLKPGDFITHIDHGVGKYGGLEKVEVNGKEQEMIRLIYADNDLLYV
NINSLNRISKYSGKDGHTPKMNKLGTEAWDKLKKTTKKKVKDIARDLIKLYAVRKSQVGF
AFSPDTYLQNELEASFIYEDTPDQEKATADVKKDMESEHPMDRLVCGDVGFGKTEVAIRA
AFKAATEGKQVAILVPTTILAMQHYKTFSERLKDFPVRIDYINRFKTTKQVKGTLEALKE
GKVEILIGTHRLVAKDVKFKDLGLLIIDEEQKFGVSVKEKLKQFRANVDTLTLTATPIPR
TLHFSLMGARDLSIIQTPPPNRQPVDTELHVFNEKLIKEAVEFELDREGQVFFIHNRVAD
LRQLGGLIQKLVPKARIAIAHGQLEGDKLEDIMLDFIEGKYDVLVATTIIEAGLDVPNAN
TILINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTPEARKRLSAIEEFSDLGS
GFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFDMYHKILDEAIQELKDEEFKGLFADEKPR
PFVSATQIETDMELLIPDEYVTNIQERYNLYTELSKIENKEALTTFAQKLEDRFGALPKQ
VWDLLRTVELQWLGKDIGLEKISWKKSVLRGYFVSDKQSKYFESELFGNILQYAQYNSRK
VNLKEVKNSLRIAVEDVKNIEEAIFVLEQMKNPVVI
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
gtgaatattaaagatatcttaaatagctataaggaagatgtgcgggttggcgaacttata
aaagagttaaatcttccgaaatctagaatacatttaaaaggacttataggatctcaagac
gcctttgttgctgctacaagttattttctaaatcatagaagcgtagtttttgtacttccg
gacagagaggaagctaatttctttttatcagacctggaaaatctcacagaaaaggaaata
ttgctttttccgtcatcgtataggaaatctgccgattttacgcaggtagactcttccaat
gtattattgcgggcagaggtgcttaacgaactaagtcatgctaccgaatatggaaaactt
atagtaacttatccggaagctgtagcagaaaaggtaatcgacagatctgctttagagaaa
aatactctggaaataaccatcaataataagttaagcatagactttattaacgagttcctg
attgaatatgatttcgagcgtacagattttgtatacgaaccgggacagttttctattaga
ggaggtatagttgatatattttctttttctaacgaattgccttaccggatagagttcttc
ggagaccatatagaatctatccgaactttcgagatagaaagccagctttcagtagaacag
gtaaagacagttactgtagttccaaacgtacagtccaaatttttaacagaaagtaatatc
tcgctacttgaatttatagatcaggattctgtaatctggtttaaagatattcagttctcg
atggatatcgttaaatctgggtataaaaaagctactgaactttggcgagcgttgtctgtt
gcagataaagagaaaaatccggaatggatagatcctaaatatgcctttgtagacgaaaag
ctcttttcagatcagctgagagactttcaggttgtcgagttcgggaagcaattcttttat
tccgaaaccaaaagtattacgtttgattccaaaccacagccttcattcaataaagacttt
aatctgcttgtacataacctgaaagagaatgaaaaggcaggtgtaaagaattatatcctt
acagattccggaaaacagcaagagcgcattttttctatcctgggcgatatagatagagat
ttgagatttgtgcctttacatgtttctatcagagaaggatttatcgattacgaacaaaag
atagcatgttatacagatcaccagattttcgatcggtattataaatataaacttcgccgt
ggttataccaaatctcaggcgataacactaaaagagcttagggatttaaaaccaggtgat
tttatcacacatatagatcatggtgtagggaaatatggagggctcgagaaagtggaggta
aatggcaaagagcaggaaatgatccgtctgatttatgcagataacgatttactatatgtc
aacatcaactcattaaaccgaatttccaaatactcaggtaaagatggccatactccgaag
atgaataagctcggaacagaggcttgggacaagttgaagaaaacgacaaaaaaaaaagtt
aaagacattgcccgtgatctgattaagctttatgccgtacgtaaatctcaggtcggattt
gctttctcgcccgatacctatcttcaaaatgaattagaagcatcctttatttacgaagac
accccagaccaggaaaaagcaacagccgatgtgaaaaaagatatggagtcagaacatccc
atggacaggctggtttgtggagatgttggatttggtaaaacagaagttgcaataagggct
gcttttaaggcggcaacggagggtaagcaggtggccattttggtgcctacaaccattttg
gctatgcaacattataaaacgttttcagagcgtttgaaagactttcctgtgcggatagat
tatattaataggtttaagacaaccaagcaggttaaaggtacattagaagcgttaaaagag
ggcaaagtagaaatactgataggtacacatcggctggtagcgaaagatgttaagtttaaa
gatctgggtttattgatcatagatgaagagcagaaatttggagtaagcgtaaaagagaaa
ttaaaacagtttcgcgcaaatgtagatacgctgacgcttactgcaacaccaattccaaga
actttgcatttctcactaatgggagcgagggacttatctattatccaaacgcctccgcca
aacaggcaaccagtggatacagaacttcacgtattcaatgaaaaactgataaaagaagcg
gtagaatttgaactggatagagaagggcaggttttcttcatacacaatcgtgtagcagat
ttaagacaattagggggcttgattcagaaattggtgcctaaagccagaatagctattgcc
catggccaattggaaggagataaactggaagatatcatgcttgattttatagaaggaaag
tatgatgttctggtggcaactacaattatagaagcaggcttggatgtgccaaatgccaat
acaattcttatcaatcatgcccatatgtttggtttaagtgatttgcatcaaatgagaggg
cgtgtggggcgttccaataaaaaagcattttgctacttattgagccctcctttatctacg
cttacaccggaggcgagaaagcgtttaagtgcgatagaagagttttctgatttgggcagt
ggatttaatgtagcgatgcgagatctggatatcagaggtagcggaaatttgttgggagca
gaacaaagtggatttattgcagaaataggtttcgatatgtaccataaaatcttagacgaa
gcaattcaggagctgaaagacgaagaatttaaaggactatttgcagacgaaaaaccaaga
ccatttgtgagtgctacgcagatcgaaactgatatggaattattaattccggacgaatat
gttaccaatattcaagaacgttataatttatataccgagctgtctaagattgagaataag
gaagctttaaccacttttgctcaaaagctggaagaccgatttggtgctttaccaaagcag
gtttgggatttgttaagaacagtcgaattgcagtggttgggtaaagatattggacttgaa
aaaataagctggaaaaaatctgtcttaagagggtattttgtctccgataaacagtctaaa
tatttcgagtcggagttatttggtaatattttgcaatacgcgcaatataattcaagaaaa
gtaaatcttaaagaagtaaaaaatagtttaagaattgccgtcgaggatgtgaaaaatatt
gaggaagctatttttgttttagagcagatgaaaaatcctgttgtgatataa
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