Phytophthora sojae: PHYSODRAFT_284249
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Entry
PHYSODRAFT_284249 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PHYSODRAFT_284249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psoj03400
]
PHYSODRAFT_284249
Enzymes [BR:
psoj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PHYSODRAFT_284249
DNA repair and recombination proteins [BR:
psoj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
PHYSODRAFT_284249
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
20639736
NCBI-ProteinID:
XP_009515641
JGI:
Physo3_284249
UniProt:
G4YG23
LinkDB
All DBs
Position
Unknown
AA seq
968 aa
AA seq
DB search
MDETAALGLSFTALCSVLKAVEATRNNDKKLDLLFSKELRSQVGGGDLYPLVRLVLPQLD
RERTYMLKEKKIAKIYVQVLGLSPASKDAQKLEHFHDPKIVDSKSVGDFAAVLYEVMLYR
STASKSRQQHTLKDVNALLDSLVQADNNATRKKVIMKLATEYSADEQKWIIRVVLKDLKI
GLRHERVLKFIHPDAMEMYNHTNDLHKVCRELRNSAVRYVPQLEPFQVFTPMLAKRVNFG
ECISAINADAFVMEPKLDGERITCHVQGKEVQFISRNGINYTENYAPSIKPHVLSQLEPG
VDCILDGEMMVWDNVGYRLREFGLLKNTANAVRKGEATNRWLCYVVWDVVYLGGSPKAEQ
LIREVFKGPGEISAVMGLPLHARRKLLLRILKPLDHRIIILEQKLVNDKSAKERHSKVMA
EVDEQVSNGGEGVIMKDLNAHYMCGESSRKTKKWLKLKPDYAGMTTDLDAIIIGGFYGVG
RRRSGNVSVFLLGVLAHSLDENSAAKATEPGAACPTVYTFAKVGTGYNLDELEQMRQELE
PYWQPWDDDNIPPHLNGWKPQKSDLRPDVWIDPRHSKILEVYGFELSFTTLYSTGLTIRF
PRCKAIRNDKEWYQCINLQDLNAARGSLSTKRASEVALGQKTATGRVKKRQTISSRRPSG
VLQGYSRADLEGIEQERNVFEGKEFCVLPGKYEAPPSDVVPAIPSGIVEDNAKQLSKQTV
EKLLHAFGGTIVQNPIESTDYVVAAGDAGFKVVNLKKQGLFNIVHIRWIFTCVAVARLIS
LKAGDFVYATDSQRELLAKEYDHYGDHFTEHIGPADLRRIIRELSSAYMSENRLAAGERH
PQPWQVQMKDLEMEEAEAMDCEYTFLAHCVVYFQHFSNDADADALLLGQTKLLEQQLRLY
GGVVAGEIDSSVTHVVVADRILAQQAQPAIRNLRHQGLPEPRTVTKEWIEQCVEQRTQVP
DDDFVVYV
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaccgcggcgctggggctgtcgttcacggcgctctgctccgtgctcaaggcc
gtcgaggccacgcgcaacaacgacaagaagctggacctgctgttcagcaaggagctgcgc
tcgcaggtgggcggcggcgacctgtacccgctcgtgcggctcgtgctgccccaactggac
cgcgagcgcacgtacatgctcaaggagaagaagatcgccaagatctacgtgcaagtgctg
ggcctgtcgccagccagcaaggacgcacaaaagctcgagcacttccacgacccaaagatc
gtcgacagcaagtcggtcggggactttgccgctgtgctctacgaggtcatgctctaccgt
agtacggccagtaaatccaggcagcagcacactttaaaggacgttaatgcgctgctagac
tcgctggtccaagcagacaacaatgctaccaggaagaaggtgatcatgaagctggcgacc
gagtactctgcagacgagcagaagtggatcatacgagtggtgctgaaagacctcaagatc
ggactgcgccatgaaagggtgctcaagttcatccatcccgacgctatggagatgtacaac
cacacaaatgatctgcacaaggtgtgcagggagctgcggaactcggcggtgaggtatgtg
cctcaactggagccatttcaagttttcacgcccatgctcgccaagcgagtgaactttgga
gagtgcatcagtgcaatcaacgcggacgcatttgtgatggagcccaaactggatggagag
cggatcacgtgccatgtgcaagggaaggaggtgcagttcatctcgcggaacggaattaac
tacacggagaattatgcgccctcgattaagccgcatgtgctgtcgcaattggagcctggg
gtggattgcatcttggacggagagatgatggtgtgggataatgtggggtatcgcctgcgt
gaattcggacttctgaagaatactgcgaacgccgttcgcaaaggagaagcgacaaatcga
tggttgtgctacgtggtgtgggatgtggtgtaccttggtggaagcccgaaagctgagcag
ttaattcgtgaggtattcaaagggcctggtgaaattagtgctgtcatgggcctgcctctt
catgcgcgacgcaagttgttactccgcattttaaagccgcttgaccaccgtatcatcatt
ctcgagcagaagcttgtcaacgacaagtctgcaaaagaaagacacagcaaggtcatggca
gaggtggatgaacaggtttctaatggaggtgagggcgtcattatgaaagatctaaacgct
cattatatgtgtggagaaagcagtcgtaagacgaaaaagtggttgaagctgaagccagat
tatgccggaatgacaacagacctggatgcaattatcatcggcgggttttatggtgttgga
agacgccgtagtggcaacgtgtcagtatttctgttgggtgtactagcacactcgctagat
gaaaacagcgcggcaaaagctactgaaccgggagctgcctgtccaaccgtgtacacgttt
gcgaaagttggcacgggctacaacctggatgagctggagcaaatgcgccaggagttggaa
ccatattggcagccgtgggatgacgacaacatcccacctcatttgaatggctggaagcct
caaaagagcgatttacggcctgatgtttggattgacccgcggcactccaagattctcgaa
gtgtatgggtttgaattgtccttcacaacgctgtactcgactggtctgaccatccgtttc
cctcgctgcaaggccattcgcaacgacaaggaatggtatcagtgtattaatcttcaggat
ctaaatgccgcgcgaggaagtttgtcaacgaagcgtgcttcggaggtcgctctgggacag
aagactgctacgggacgcgtgaagaagcgccagactatttcatctcggcgccccagtggc
gtcttgcaagggtactctcgggcagatttggaaggtattgaacaagagcgaaatgttttc
gaagggaaggagttctgtgtgctgcctggaaaatacgaagcacctccgtccgacgtcgtc
ccagcgattccaagcggtattgtcgaagataacgccaagcaattgtctaagcagacagtt
gagaagctgctccatgcgttcggaggcactattgtgcagaatcctatcgaaagcacagat
tacgttgtggccgctggagatgctggattcaaagtggtgaatttgaagaagcaaggcttg
ttcaacattgtgcacatcaggtggatattcacttgtgttgcagtagctcgattgatatcg
ttgaaggcgggcgactttgtatacgctacggactcacaacgcgagcttcttgcgaaggaa
tatgatcactacggagaccacttcacggagcatattggacccgctgatctacggcgcatt
attcgagagttgtccagcgcttacatgtctgaaaaccggcttgctgcaggcgaacgccat
ccgcagccttggcaagtccaaatgaaagatttggagatggaagaggccgaagcgatggat
tgcgagtacacctttttggcgcattgcgtggtgtatttccaacacttcagcaatgatgca
gacgcggacgctctcttgctgggccaaacgaagctgctcgagcagcaattgcgactttac
ggaggggtggttgcaggcgagatcgattcctctgttacgcatgtggtggtggccgatcgg
attctagcccaacaagctcaaccagccatcaggaacctacgtcaccaaggcttgccagag
ccacgcacagtcacgaaggaatggattgagcagtgtgtggagcaacgcactcaagttcct
gacgacgactttgttgtgtatgtgtag
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integrated database retrieval system
