Phytophthora sojae: PHYSODRAFT_318253 Help Entry PHYSODRAFT_318253 CDS       T03459                                  Name (RefSeq) hypothetical protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism psoj  Phytophthora sojae Pathway psoj03018   RNA degradation Brite KEGG Orthology (KO) [BR:psoj00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     PHYSODRAFT_318253  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:psoj03019]     PHYSODRAFT_318253 Enzymes [BR:psoj01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      PHYSODRAFT_318253 Messenger RNA biogenesis [BR:psoj03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      PHYSODRAFT_318253   mRNA degradation factors    3'-5' decay     Ski complex      PHYSODRAFT_318253 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT DEAD Helicase_C MTR4-like_stalk MTR4_beta-barrel RIB43A Ski2_N Motif Other DBs NCBI-GeneID:  20644184 NCBI-ProteinID:  XP_009534446 JGI:  Physo3_318253 UniProt:  G5A4I4 LinkDB All DBs Position Unknown AA seq 1421 aa AA seqDB search MAPPAVERILAELSRLNEEAASSATPPSPSPSANAALDQFSVLSASSCAPEAKELEAVAH PLFALERLGPFPRGWGDSDVPQSRLLAQMPMSAPRQELVPQRASIVKSPLKIRYEFRPVD VSRSGADAGFSSALTKQDEYARGKMSNKPFSPGGDSLAELQTETQQDEMTPMQRLLTKQE EQDRNRLVLEREEELDETLLESLVFDVPGINGCLTAEDARKVEAQEQQQVVQEVETVGVN PKSLLKPYIEAVADRDHVAAIRSAVLDEKAANAMRQNDDNTTVVLDQLLREMEDDGELME LGFSVEDDEQDAKGDGSGDSTEAGSSAVAVGADPKIGKAAEGASEADGSVEDPEMELESI LDSASESTALTLQKRTSPTSEWASMASVDVRNFHEKVPEMAMKYDFELDVFQKECVIHLE RHECVFVAAHTSAGKTVIAEYAIAMSQKHMTRTIYTSPIKALSNQKYRDFRTKFGPDNVG LITGDVSINPEASCLVMTTEILRSMLYRGADIIRDIEWVIFDEIHYINDSERGVVWEEVI IMLPEHIGMVFLSATTPNHLEFSDWIGRTKKQKIHVISTYKRPVPLQHFLYAGKELFKLY DATTGYLPNAHGAAKAKIFPASDKSKAGGRGGRAVARGGGSSANARTLRTSGGDQGEWTK LINTLKDKSLLPVVVFAFSKRLCEESANKLAKLDLSTPSERSEIHLFLETSVQRLQGSDR ELPQVLMMKEMLKRGIGVHHGGLLPIIKEMVEILFGRGLVKVLFSTETFAMGVNMPARTV VFNGIRKHDGKNFRDLLPGEYTQMAGRAGRRGLDSVGTVIIACWNDVPEPTSLRTMLAGK ATSLSSQFRLTYNMILNLLRVEVLTVEDMMKRSFSEFHTQKALASKNIPKLIQKGKTLHQ QLERSLVEDYPHLEASGELAQMQEFYQLKREKRELEKKLTKWLLTNNIQAAKSAIAPGRV VILNVKGLSSDQLALVVRTNSAMVSEGGTARSKLSFETELQSSSSTDTSHKGVFKSIMVI TLCPDDYEPPKVEVASTTKKNPDTLFGGGRMLRSKKDDDDDRMFGRMGKKGKSESQETSE LSAPSTATLLGRKYAVLEVPESCVESVTSVVASSVNTKTLVASSSKKELASSIEFLAQLE KDTATTQKAAIAYVDLMGELKVNDLEVATGYTQWQQMHSMVVSHPCATDSPSVSRVMGKV EKIFKLKAYLVRMTRELSNDSLSLFPDFQQRLSVLKRLGYISKDGVVQVKGRVACEINTC EELVLTEMIFENVLANLEPEEIVAVLSALIFQEKSQSEPTLTPTLESTREVVKNIAESLG LIQLEQHLEIDPAVYCKGALNFGLMEVVYEWARGMPFKQLCELTDVQEGSIVRCITRLDE VCREVRNAARVIGDPQLYRKMEVASEAIKRDVVFASSLYLS NT seq 4266 nt NT seq  +upstreamnt  +downstreamnt atggcccctccagcggtggagcgcatcttggcggagctgtcgcggctgaacgaggaggcc gcatccagcgccactccgccctctccctctccatcggccaatgcagctctggaccaattc tccgtcctctcggcgtcctcctgcgcccccgaggcgaaggagctggaggctgtagcgcac ccgctcttcgcgttggagcggctggggccgttccctcgcggctggggcgactccgacgtc ccccagagccgcctgttggcgcagatgcccatgtctgcgccgcgacaggagctcgtcccg cagcgcgcgtccatcgtcaagagccccctgaagatccggtacgagttccggcccgtggac gtgtccaggagcggcgcagacgccggattcagtagtgcactgaccaagcaggacgagtac gcgcgcggcaagatgagcaacaagcccttctccccgggcggagactcattggctgagctg cagacggagacgcagcaagacgagatgacgcccatgcagaggctgctcacgaagcaggag gagcaggacaggaaccggctcgtgttggagcgggaagaggagctggacgaaacgttgctc gagagcttggtgttcgacgttcctggtatcaatggatgcttgacggcggaggatgcgagg aaggtcgaggcgcaggagcagcagcaggttgtgcaggaggtggagacggtcggcgtgaac cccaaatcgctgctgaagccctacattgaagcggtggcggacagggaccacgtcgcggcg atcaggagcgccgtgctggatgagaaggcggcgaacgccatgaggcagaacgatgacaac acgacggtcgtactggatcaactgctgcgcgagatggaggacgatggggaactcatggaa ttgggcttttcggtcgaagatgacgaacaggacgcgaagggggatggaagtggggatagc acagaggctgggagcagcgcagtggcagtgggcgctgatccgaagattggtaaggctgca gaaggagcctccgaagctgatggtagcgttgaggatccggagatggagctggagtcgatc ctggattcggcatccgagtcaacagcgctcaccttacagaagcgaacgagcccgacgtcc gagtgggccagcatggcgagtgtcgatgtgcgcaacttccacgagaaggtgccggagatg gccatgaagtacgacttcgagctggatgtgttccagaaggagtgtgtcatccatctcgag cggcacgagtgcgtgtttgtggcagcacatacctccgcaggcaagacggtgattgcagag tacgcgatcgcgatgtctcagaagcacatgactcgcaccatctacacgtcgcccatcaag gcgttgtcgaaccaaaagtaccgcgacttccgtaccaagttcggccccgacaatgttggc cttattactggcgatgtcagcatcaacccggaggcgagttgcctcgtcatgacgactgag atcttgcgttcaatgctgtatcggggtgctgatattatccgcgacatcgagtgggttatc tttgatgagattcactacatcaacgacagcgagcgcggagtggtgtgggaggaagtgatt atcatgcttcccgagcatatcggcatggtgttcctctcggcaaccacgccgaaccacttg gagttttccgactggattggacgcacgaagaagcagaagattcacgtgatctctacttac aagcggcccgtgcccctccagcacttcctctatgctggcaaggaattattcaagctgtac gatgccaccactggatacctaccgaatgcccacggtgcagccaaggccaaaattttccct gcgtcggataagtcgaaggctggaggtcgaggcggaagagctgtggctcgcggtggcggt agcagcgccaatgcacgtacccttcgtacatctggaggagaccaaggtgagtggaccaag ctgatcaacactttgaaggacaagtctctgctcccggtggtcgtgtttgctttcagcaag cggttgtgtgaggagagcgcgaacaagctggcgaagcttgacctcagcaccccgtcagag agatcagagatccatcttttccttgagacgagtgtgcagcgactccagggatcagaccgc gagctcccacaggtgctgatgatgaaggaaatgctcaagcggggaattggtgtgcaccac ggaggtctcctccctattatcaaggagatggtagaaatactgttcggtcgcggtcttgtg aaggtgctgttttcgactgaaacgtttgccatgggtgtgaatatgcctgcgcgtacggtg gtgtttaacggcattcgtaagcatgacggcaagaacttccgcgatcttctgcccggggag tacacgcaaatggctggccgagcgggtcgtcgtggtcttgattccgttggtaccgtcatc atcgcgtgctggaacgatgtccccgaacccacttcattgaggacaatgttggcaggaaag gcgacgtctctctctagtcagttccgtctgacttacaacatgatcttgaacctcctacga gtggaggtactgacggtggaagacatgatgaagcgctcgttctcggagttccacactcaa aaggcgctggcgtcgaagaatatccctaagctgatccaaaagggcaagacgttgcaccag cagctggaacggtcactcgtagaggactacccgcacctcgaggctagcggcgagcttgca cagatgcaggaattctaccagctgaagcgtgaaaagcgtgaactggagaaaaagctgacc aagtggctcctgacaaacaatatccaagcagctaaaagtgcgatagcaccgggccgagtc gtgattttgaacgtcaagggcctttcgtccgaccagttggcgctggtcgtacgtaccaac tctgctatggttagcgagggagggactgctcggtcgaagctttcgtttgaaaccgagctt cagagctcaagctctaccgacacaagccacaagggagtattcaagtcgattatggtgatc actctctgtccggatgactacgaacctcctaaggtagaggtggcatcgaccacgaagaag aaccctgacacacttttcggaggaggacgcatgcttcgcagcaagaaggacgacgacgac gaccgcatgtttgggcggatgggcaagaagggcaagtctgaaagtcaagaaaccagtgag ctctcggcgccatcaactgctacgcttctaggaaggaagtacgccgtgctggaggtgcct gagagctgcgttgaaagcgtaacctccgtcgtagcctcaagcgttaacaccaagacactc gtggcttcatcgtcgaagaaggagctcgccagcagcattgaattcctggcacagctggag aaggatacagctacaacacagaaggctgcgatcgcgtacgtcgacttgatgggcgagctt aaggttaatgatctggaagtcgcgacgggctacacgcagtggcagcagatgcactcgatg gtggtcagtcatccgtgtgccactgattcgccgtcggtgtctcgtgtcatgggtaaagtg gaaaagatcttcaagttgaaggcgtatttagtgcggatgacgcgtgagttgtcgaacgat tcgctttcgctcttcccggatttccagcagcgactgagtgtgctgaagcggctcgggtac atttccaaggacggcgtcgtgcaggttaagggtcgagtggcgtgcgagatcaacacctgc gaagagctcgtgttgacggagatgatatttgagaacgtgctggcgaacctggagcccgag gagatcgtggctgtgctctctgcgctgatcttccaggagaaatcacagtccgagcctacg ttgaccccaacgctggaaagtacccgcgaggtggtcaagaacatcgctgagtcccttgga ttgatccagctcgagcagcacctagagatcgaccctgcagtgtattgcaagggagctctc aactttggtttgatggaggttgtgtacgagtgggcgcggggtatgccgttcaagcagctg tgcgagctcacggacgtgcaggaaggttcgattgtgcgctgtattacgcgtttggacgaa gtttgtcgcgaggtgcgcaacgctgctcgtgtcatcggtgatccgcagctgtaccgcaag atggaggtcgcctccgaggcgatcaagcgagatgtcgtgttcgccagcagcttgtaccta tcctaa

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