Phytophthora sojae: PHYSODRAFT_479459
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Entry
PHYSODRAFT_479459 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
psoj
Phytophthora sojae
Pathway
psoj03022
Basal transcription factors
psoj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHYSODRAFT_479459
09124 Replication and repair
03420 Nucleotide excision repair
PHYSODRAFT_479459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psoj03021
]
PHYSODRAFT_479459
03400 DNA repair and recombination proteins [BR:
psoj03400
]
PHYSODRAFT_479459
Transcription machinery [BR:
psoj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHYSODRAFT_479459
DNA repair and recombination proteins [BR:
psoj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHYSODRAFT_479459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
20655136
NCBI-ProteinID:
XP_009518278
JGI:
Physo3_479459
UniProt:
G4YSH4
LinkDB
All DBs
Position
Unknown
AA seq
490 aa
AA seq
DB search
MDAFDFLETLPPATLERLYQDPWACQAIFQALPPLAQQFVMRLLPSNAAVPRSLLEQWVV
PEPGDANRMPPQFHAALHKLEGLKVFVHQDGAYRPHPTFQKQLMVEKWLLTYALSNLGGS
PWERGRLQLPKDPENTFAAADLERYARARWDSVLHYMVGSTAVQEPPQSVVDILLRTRLL
QASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTLKQEDILQFLFQISYC
QTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGSTGQKRSHV
SLTSSFAGVRAGLKSQVADPRQAPTADHSAQLLVVVETNFKIYAYTTSTLHVAMLSVFVD
IVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQIYL
WERERNRVQFMEGILFDGFNTKEDYESVRDYAKDLKVLTWSDPIHFRLSITTAGIDDVRH
YIQSQLSSRA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggacgccttcgacttcctcgagacgctgccgccggcgacgctggagcggctgtaccag
gacccatgggcgtgccaggccatcttccaggcgctgccgcccctcgcgcagcagttcgtg
atgcggctgctgcccagcaacgccgccgtgccgcgctcactgctggagcagtgggtcgtg
cccgagccgggggacgccaaccgcatgccgccgcagttccacgcggcgctgcacaagctt
gaaggcctcaaggtgttcgtgcatcaggacggggcgtatcgaccgcacccgacgttccag
aagcagctcatggtggagaaatggttattgacttacgctctgagtaatttgggcgggtct
ccgtgggagcgagggcgtctgcagctccccaaggacccggagaacacgttcgctgcggcg
gatttggagcgatatgcgcgagctcggtgggactcggtgcttcactacatggtgggctcg
acggctgtgcaggaaccgccgcagtcggtggtggatattctgctacgtacaaggctgctg
caggctagtggagctgattcaagggcgctgcatatcacggatacgggatacgagtttatg
ctgaaggacattcacgtgcagatgtggatcttcatgctggagtacatccgtacgctggac
aacacggggacgttgaagcaggaggatattttgcagtttctgttccagatcagctactgc
cagacaggagaatactatgccgtggcagatctgacggagactcagcggctactacttggc
gattttatcgactttggactgctcttccgcaagcgcccgaactccgacaggttttacacg
acgagcctcgcagttaacctcatttttggtggatctacgggccagaagcgcagccacgtg
agtctcacgagctcgttcgctggcgttcgcgctggcttgaagtcacaagtagcagaccca
cgccaggccccgacggctgatcacagtgcccagttgcttgtggtggtggaaacgaacttc
aagatatacgcctacacgacgtcgacgcttcacgtggccatgctcagtgtgttcgtcgac
attgttgcacggttgcccaatctggcaatcggcttcattactcgcgagagtcttcggtcg
gcactcatccacggtatctcggcgcagcaaatctacgacttcctgatgaagcacgcccac
ccgaagatgcgccgcaactcgccagtcatccccgagaacatcgcagaccagatctacttg
tgggagcgcgagcgcaatcgcgtgcagttcatggagggaatcctcttcgatgggttcaac
accaaggaagattacgagagcgtgcgcgactacgccaaggaccttaaggtgctcacgtgg
tcggaccccattcacttccgactgtcgatcacaactgctggtatcgacgatgtgcgccac
tacattcaaagccagctttcgtctcgagcgtag
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integrated database retrieval system
