Phytophthora sojae: PHYSODRAFT_542338
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Entry
PHYSODRAFT_542338 CDS
T03459
Name
(RefSeq) hypothetical protein
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
psoj
Phytophthora sojae
Pathway
psoj03082
ATP-dependent chromatin remodeling
psoj03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
psoj00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PHYSODRAFT_542338
03083 Polycomb repressive complex
PHYSODRAFT_542338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psoj03036
]
PHYSODRAFT_542338
Enzymes [BR:
psoj01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
PHYSODRAFT_542338
Chromosome and associated proteins [BR:
psoj03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
PHYSODRAFT_542338
HDAC complexes
Sin3A-HDAC complex
PHYSODRAFT_542338
BRAF-HDAC complex
PHYSODRAFT_542338
REST complex
PHYSODRAFT_542338
SHIP complex
PHYSODRAFT_542338
MiDAC complex
PHYSODRAFT_542338
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
PHYSODRAFT_542338
Heterochromatin formation proteins
Other heterochromatin formation proteins
PHYSODRAFT_542338
Chromatin remodeling factors
NuRD complex
PHYSODRAFT_542338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
20662464
NCBI-ProteinID:
XP_009523856
JGI:
Physo3_542338
UniProt:
G4Z985
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MASATKKRVSYFYHPEEGHFYYGPGHPMKPHRMKLAHHLVVNYDLYRKMDIFEPHIASAE
EIKNFHAPDYIDFLQRISPSNQKDLATELQKYNLGELTDCPVFDGIFDFCQIYSGGTLDA
VSRLNHGQCDIAINWAGGLHHAKKSEGSGFCYVNDIVLGILELLKYHPRVLYIDIDVHHG
DGVEEAFYVTDRVMTVSFHKYGDFFPGTGDIKDIGTKNGKYYAVNFPLLSGMNDESYESV
FKPVIQKVMETFAPSAVVLQCGADSLTGDRLGCFNVTTRGHGECVKFVKSFGLPMLVLGG
GGYTIRNVSRAWAYETSILLDEEVSNNIPYNDYFEFYAPNFKLHLEPDPDLENANSREYL
DECKTKIFENLRALTGAPSVQMSQAPPTHMLREEDEYAADPDSRTDNDGKRQHEAEFYRD
GKDQRGNDDDADASATAANGSAQEGGDNTAPDVIPMDVD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccaccaagaagcgcgtgtcgtacttctaccaccccgaggagggccacttc
tactatggcccgggccaccccatgaagccgcaccgcatgaagctggcgcaccacttagtg
gtcaactacgacctgtaccgcaagatggacatcttcgagccgcacatcgcgtcggccgag
gagatcaagaacttccacgcgcccgactacatcgacttcctccagaggatcagccctagc
aaccagaaggacctcgcaaccgagctgcagaagtacaacctgggcgagctgacggactgc
cccgtgttcgacggcatcttcgacttctgccagatttactcaggcggcacactggacgct
gtgagtcgactgaaccacggacagtgcgacatcgccatcaactgggcgggaggcctgcac
cacgccaagaagtcggagggatcgggcttctgctatgtgaacgacattgtgctcggcatc
ctggagctgctcaagtaccacccacgcgtgctgtacattgacattgacgtgcaccacggc
gacggtgtggaggaggccttctacgttacggaccgagtcatgaccgtgtccttccacaag
tacggcgacttcttccccggcacaggcgacatcaaggatatcggcaccaagaacggcaag
tactacgccgtcaacttcccgttgctgagcggcatgaatgacgaaagttacgagagtgtg
ttcaagcctgtgatccagaaggtcatggagacttttgcaccctctgctgtggtgctgcag
tgtggcgctgactcgctgactggagaccgtcttggctgtttcaacgtcactacacgagga
cacggtgaatgtgtgaagttcgtgaagagctttggcctgccgatgctggtgctcggcgga
ggtggctacacgatccgcaacgtctcgagggcatgggcctacgagacatccattctgctt
gacgaggaggtgtccaacaacattccgtacaacgactacttcgagttctacgccccgaat
ttcaagctgcacctcgagccggacccggatcttgagaacgcgaattctagggagtacttg
gacgagtgcaagaccaaaatctttgagaaccttcgcgcgttaactggagctccgagcgtt
caaatgagccaagcgcctccgacgcacatgcttcgcgaagaggatgaatacgcggcggat
ccggactcacgaaccgataatgacggaaagcggcagcatgaggccgagttttatagagac
ggcaaggaccagcgaggaaacgacgatgacgccgatgccagcgctactgcagccaacggt
tcagcccaggaaggaggggacaacacggcaccggatgtcatccccatggatgttgattag
DBGET
integrated database retrieval system