Papaver somniferum (opium poppy): 113272346
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Entry
113272346 CDS
T05758
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113272346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113272346
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113272346
Spliceosome [BR:
psom03041
]
Complex C
Other components
Step II factors
113272346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
T2SSE
SLFN-g3_helicase
AAA_24
Flavi_DEAD
ABC_tran
ATPase
AAA_25
Sec16
cobW
PhoH
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
113272346
NCBI-ProteinID:
XP_026377981
LinkDB
All DBs
Position
4:37157603..37161073
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AA seq
1156 aa
AA seq
DB search
MEGGYHGEIDLYAVAVRLSKSDEVSYGGLCVPGKDRVVSRTREKKSLLGLDVLANAKREL
RSVGKHKRRDFRDDTISESRSVRQRYDGTGQRYREDSRRERSKYECPTPGRSVWDDGRWE
WEDTPGRDGHSTPSRRYRPSPAPMLVSSSPDGHLVSPWLGDAPSYARSAASPWDYVTPSP
VPIRASGTSSVRYSSSSKDNGVDERSSSRAKSNEITEKLRLQMEYDADRAWYDRDEGNTT
FDGDSSSAFLGDESSFRNKKAEVVKKLVRKDGSLMTLAQTKKLSQMTTDYSQWEDRQLMR
SGAVRGTKVQTETEIEDEDECRVNLLIHDIKPLFLDGRVVFTKQADPVVPLKDPTLDMAI
ISRKGSALVREIHEKQSQNKSRQRFWELAGSNLGDILGIEKTTEQIDADTNAVGDKGEID
FKKDAKFSQHMQVKGEAVSEFGKSKTLLEQRQYLPIYSRRDELMQVIRENQVIIIVGETG
SGKTTQLTQYLCEEGYTTEGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDV
TGPNTKIKYMTDGVLLRETLKDSDLAKYSVIVMDEAHERSLNTDVLFGILKKVVSQRRDF
KLIVTSATLDAQKFSNFFGGAPLFEIEGRTFDVDIFHSKCPCEDYVEGAVKQAMSIHITC
PPGDILIFMTGQEEIEATCFSLQERMDDLASTTKKGVPKRVPKLLILPIYSQLPADLQAK
IFQKAEDGARKCIVATNIAETSLTVDGILYVIDSGYSKMKVYNPRMGMDALQVFPVSQAA
AKQRAGRAGRTGPGQCYRLYTKSAFDKEMLPSPVPEIQRTNLGNVVLLLKSLKIENLLDF
DFMDPPPQDNILNSMYQLWILGALNNVGSLTELGWMMVEFPLDPSLAKMLLIGGQLGCLN
EVLIIVSMLSVSNVFFRPKARAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCN
DHYLHVKILRKAREVRSQLLDILKTLKIPLTTCGLDWDVVRKAICSSYFHNAARLKGIGE
YVNCRNGMPCHLPKHSALYGLGHSPDYVVYHELILTTKEYMQCATEVEPQWLAEMGPMFF
SVKDSDTSMLDHKKKQKDVKTAMEEEMENLRKEQAEMEKVNKEKEKQKRAKQQQQILMPG
YTKCSSTYLRPKKFGL
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggagggaggttatcatggggaaattgacctgtacgcagtggcagtgagattatcgaaa
tcagatgaagttagctatggagggttatgtgttcctggaaaggatagagtggtttctaga
actcgcgagaagaaatctcttctaggtttggatgtgctggcgaacgcaaaacgagaattg
agaagtgttggaaaacataaacgaagagatttcagggatgatactatttcagagagtaga
agtgtgaggcaaagatatgatggcactggtcaaaggtaccgtgaagactcccggagagag
cgaagcaaatatgaatgtccgacacctggaagatctgtctgggatgatggaagatgggaa
tgggaagacaccccaggtagagatggtcattcaacacctagtaggaggtaccggccttca
ccagccccaatgcttgttagttcatcacctgatggtcatttggtgtccccatggctgggc
gatgcaccatcttatgcaaggtctgctgcttctccatgggactatgtaaccccatctcca
gtcccgatacgtgcttctgggacatcctcagtgagatattcaagttcttcgaaggataat
ggtgtagatgaacgttcttccagtagggcaaaaagtaatgagatcacagaaaagttgcgt
ttacagatggagtacgatgctgatcgagcatggtatgatagagatgagggtaacacaact
tttgatggtgatagctcatcagcttttcttggggatgagtcttctttcagaaacaaaaag
gcagaggtggtcaagaaactggttcgcaaggatggaagtttgatgacacttgcacaaacc
aaaaaattatcacagatgacgactgattattcacaatgggaagaccggcagcttatgaga
tccggagccgttagaggaacaaaggtgcaaaccgaaaccgaaatcgaagatgaggatgaa
tgcagagttaatctcctgattcatgatataaagcctcttttcctggatggaagagtggtc
ttcacgaaacaagcagatcctgtagtgcccttgaaggatcccactttagatatggcgatt
atatcacgcaaaggatctgctctagtccgagaaatccatgagaaacaaagtcaaaataaa
tctcgtcaaaggttttgggaactcgcgggatcaaatcttggtgatatcctgggtattgaa
aagacaacggagcagatcgatgcagatactaatgcagttggggataagggtgaaattgac
ttcaagaaggatgctaagttctcccagcacatgcaggtgaagggcgaagctgttagtgaa
tttggcaagtcaaaaactttactggagcaacgtcaatacctgccgatatattctaggcgt
gatgagttgatgcaggtaattcgtgaaaatcaggtgatcattatagtgggagaaactggg
tcaggaaaaacaactcaacttacacagtatctgtgtgaagagggatatacaacagaggga
attgtcggttgcacacaaccaaggcgtgttgcagcaatgagtgttgcaaagagagtcagt
gaagaaatggagactgagctaggtgataaagttggttatgctattcggttcgaagatgtg
actggtccaaatacaaagataaagtacatgaccgatggagtacttctacgtgagacacta
aaggattctgatctcgctaaatatagtgtcatagtcatggatgaagcacatgaaagatct
ctaaatacggatgtgctgtttggaattttgaaaaaagttgtttctcagcgtcgtgacttt
aagctcattgtgacatctgcaaccctggacgctcagaaattctccaacttttttggaggt
gctccactcttcgaaatcgaggggaggacgtttgacgttgatatctttcatagtaagtgt
ccttgcgaagactatgtcgaaggtgccgtgaagcaggccatgtccattcatatcacgtgc
cctcctggtgatatcttaatttttatgactggtcaagaagagattgaagcaacttgcttt
tccctacaagagcgtatggatgaccttgcttccaccaccaagaaaggggttcctaaacgg
gttcctaaactgttgatactcccaatatactcccaacttccagctgatctgcaagccaaa
atctttcaaaaagctgaagatggggcgcggaaatgtatcgttgcaactaatattgctgag
acgtcactgacggtggatggtatcctgtatgtgattgacagtggttatagtaagatgaaa
gtgtacaatcctaggatgggtatggatgcactccaagtgtttccagtcagccaagctgct
gctaaacaacgtgcaggtcgtgcaggcagaacaggcccaggtcaatgctacaggctttac
actaagtctgcttttgataaagaaatgcttccgagtcctgtacctgagattcaaaggact
aatcttggtaatgttgttctattgctgaaatcactgaagattgagaacctgctggatttt
gacttcatggacccgccacctcaagataatatcctcaactcgatgtaccaattgtggata
ctgggtgccttgaataacgttgggagtctgacagagctggggtggatgatggtggagttc
ccattggatccatcacttgcaaaaatgcttctaattggaggacaacttggatgcttaaac
gaggtgttgataattgtgtccatgttatcagtgagcaatgtattctttaggccaaaagcg
cgtgctgaggaaagtgatgcagccagggagaagttttttgtgccagagtctgatcacctg
acgttgctcaatgtataccagcagtggaaagcaaatcaataccgtggtgactggtgtaac
gaccattatttgcatgtgaaaatattaagaaaggccagagaggtgaggtcacagttacta
gacattttgaagaccttgaagatcccactaaccacgtgtggtctggattgggatgtcgta
cgtaaggctatatgctcttcctacttccacaatgctgccagactaaaggggatcggtgag
tatgtgaactgccgcaatgggatgccgtgtcaccttcctaaacatagtgctctgtatgga
ctgggtcactctccagattatgtggtgtatcatgaattgattttaactaccaaggaatat
atgcaatgtgcaacggaagtggagccacagtggttagcggagatgggtccaatgtttttt
tcagtcaaggattcagatacctcgatgttggatcacaagaagaagcaaaaagacgtgaag
actgcaatggaggaagagatggagaatttgaggaaggagcaagcagaaatggagaaggta
aacaaggaaaaagagaagcagaagagggctaagcagcagcaacagattttaatgcctgga
tataccaaatgttcgtccacttatctaagaccaaaaaagtttggattgtga
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integrated database retrieval system
