Papaver somniferum (opium poppy): 113298887
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Entry
113298887 CDS
T05758
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
113298887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psom03400
]
113298887
Enzymes [BR:
psom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113298887
DNA repair and recombination proteins [BR:
psom03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
113298887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
113298887
NCBI-ProteinID:
XP_026403537
LinkDB
All DBs
Position
7:complement(158568556..158579052)
Genome browser
AA seq
1245 aa
AA seq
DB search
MSDQSAVKFSVLCSLFNWMQRSKTSSKKRSKFRKFLDNFCKTGDDYFGSIRLILPSLDRE
RGSYGLKESVLANCLIDAVGLSKDSEDAKKLISWRKGGSKTGYNVGNFGLVAAEVLQRRQ
GMISGGLTIKELNNMLDRLASSENRGDKTAVLADLIQKTNAQEMKWIVMIILKDLKIGVS
EKSIFQEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEIGKAVRPQLALRISDAAS
AWKKLHGKEVVVECKFDGDRIQIHKSGPKINFYSRACGYWKDRNSQRNFLDHPEYEHAMS
NVIMQNILVDRCILDGEMLVWDTSTNRFAEFGSNQEIAKAAREGFASDRQLCYVAFDILY
VGDTSVIHQSLKERHELLRKVVKPLKGRLEILVPDGGINAHRSSGEPCWSVIVHNVEMVD
KFFKATVENRDEGIVLKDLGSKWEPSDRSGKWLKLKPDYIHTGSDLDVLIIGGYYGSGRR
GGEVAQFLVGLAEPSASNTYPRRFISFCRVGTGLSDDELDALVTKLKPYFRKNEYPKKTP
SFYELTNHSKERPDVWIDSPEKSIILSITSDIRTVRSEVFAAPYSLRFPRIDRVRYDKPW
HECLDLQSFVDLVNSSNGNTRGADYGSSQYNKPKRAKPSSKGDKKKAPIVPSHFLRTDVS
GITEETPIFANMMFYFINVPPSHSLDLFRKMVVEHGGEFSMNRNDSVTHCIAAERKGIQF
EAAKRRGDVIYYSWVLDCCLQKRLLHLQPKYFLHLGDSSKEKLQEEVDEFADSYYWDLDL
ADIRQLFNNINPSEDLRSIAYYKKKYCPKTKWSRFQDCCIYFYSLKNSINSDWEFLLETS
IKRLRLQVTMGGGEVSEKLSYATHLVVLSVPGCDVEFDSILESFAAAEKRRLCSKKLHVV
AYEWLEDSLEKDQKLDEEKYNLKPDGLEESNIEMSEHEISDTSEKDGKSISEEPAVKNVR
TSAASEVVGKRKRGRPTLGNAKRGRTVASQARQTRVKGRTRPAKLDQSEPEKSASSDDTS
NKDAIESKRGAQGVQGSITGLSQSRRTRAKMGAKHAKLDENELELSAASENAPSNEATES
DRGFHEIHETETKEDDKNSTKEKAEVFDVSQGNNINGIASMELDGRDDYQDSEKVTGHSE
IYNSKGEEKIDVSDKPEVTLDPLQAMLLNMIPSLGVKSEAYQSASGSEVPVRIDPSIGVK
KTEASSKPALEDEVPPVRVDPDAGPVQKKKKVSYKDVAGELLKDW
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcaaagtgcagtgaaattcagcgtactatgcagtttattcaattggatgcaa
agaagtaaaacatcatcaaagaaacgatcaaagttccggaaatttctagataatttctgt
aaaactggtgatgattatttcggttcaatacgattgatattaccatcattagatagagaa
agaggaagttacggattgaaagaatcagtacttgctaattgtttgatcgatgccgttggt
ttatctaaagattctgaagatgctaagaaacttattagttggagaaaaggtgggagtaaa
actggttataatgttgggaattttggtcttgttgctgctgaggtactgcaaagaaggcaa
ggaatgatatctggtggattgacgatcaaggagttaaataatatgcttgatcgcttagcg
tcaagtgagaatagaggtgacaagactgctgtacttgctgatctcatacagaaaacaaat
gcacaagaaatgaagtggattgtcatgatcattctaaaagacctaaaaattggagtcagt
gaaaagagcattttccaagaatttcatccagatgcggaagacttgtttaatgtcacttgt
gacttaaaactagtttgtgaaaagcttaaggaccgaagtcaacggcacaagcgccaggac
atagaaattggaaaggctgtacgccctcaactagctctgaggattagtgatgctgcttct
gcatggaaaaagcttcatggaaaagaagtcgtagttgagtgcaaatttgatggcgaccgc
attcaaattcataaaagtggacctaagataaacttctactcaagggcttgtggttattgg
aaagacaggaattcccaacggaactttcttgatcaccctgaatatgagcatgcaatgtca
aacgtcatcatgcagaatatcttggtcgataggtgcatccttgatggtgaaatgttggtc
tgggacacatctacaaatcgttttgccgaatttgggtctaatcaggaaattgcaaaggct
gcaagagagggattcgccagtgatagacagttatgctatgttgcatttgacattctttat
gttggagacactagtgttatccatcagagcttgaaagagagacatgaacttcttcggaaa
gtggtaaagcctttaaagggccgtttggaaatattagtaccggatggtggtattaatgct
catcgttcttcaggggaaccttgctggtctgttattgtgcataatgttgaaatggttgac
aagttcttcaaagccactgtagagaatagagatgaagggatcgtattgaaagaccttgga
tctaaatgggaacctagtgatcgaagtggaaagtggttaaagttgaagcctgattacata
cacactggttctgatctggatgttctgattataggtgggtattatggttctggtcgtcga
ggaggggaggttgctcagtttctggtgggtcttgcggaaccttcagcctctaatacatac
cccagacggtttatatcattttgcagagttggtactggcctttctgatgacgagcttgat
gcattggttacaaaattgaagccctattttaggaagaatgagtacccaaagaagacaccg
agcttttatgaactaaccaaccattcaaaagagaggccagatgtttggattgatagtcct
gaaaaatcaatcatattgtccataactagtgatatccgaactgtcaggtctgaggtattt
gctgcaccctacagtttgagatttcctcgcattgacagggtgagatatgacaaaccttgg
catgagtgccttgatctgcagtcttttgtggacttggtgaactcaagtaatggcaacact
aggggggcagattatggaagctctcaatataataaaccaaagcgcgccaaaccctcgagc
aagggagacaagaagaaggcccctattgttccttctcatttccttcgcacagatgtctcc
ggcataacagaagaaacccccatatttgcaaacatgatgttttatttcatcaatgtaccc
ccaagccattctctggatctctttcgcaaaatggtggttgagcacggaggggagttctcg
atgaaccgaaacgattcagttactcactgcattgcagcagaaagaaaaggtatccaattc
gaggcagcaaagcgtcgtggagacgttatttactactcatgggttctggattgttgctta
caaaagcgtcttctgcatttgcagccgaagtatttccttcatctcggcgactcatcaaag
gaaaaattacaagaagaagttgatgaatttgctgattcttattactgggatcttgatctc
gcagacattagacagctcttcaacaacataaatccatcagaagatctaagaagtattgcc
tactacaagaaaaagtattgcccgaagacaaaatggtcccgctttcaagattgctgcatt
tacttctactcattaaagaactctataaattctgattgggagttcctgttggagacttca
ataaagagattgaggcttcaagttactatgggtggaggtgaagttagcgagaaactttct
tatgccacccatctggtagtcctgtcagtacctgggtgtgacgtagaatttgattcaata
ctggaaagctttgcagcagcagagaaacgtcgattatgtagcaaaaagctgcatgttgtg
gcttatgaatggttagaggactctttggagaaggaccagaaattggatgaggaaaaatac
aacttgaagcctgacgggttagaagagtcaaatattgaaatgagtgagcatgaaatatct
gatacttccgaaaaggatgggaagagtattagcgaggaacctgcggtaaaaaatgtgaga
acgtcagcagcatctgaggttgttgggaaacgaaagagaggaagacccactcttggaaac
gcaaaaagaggacgaactgttgccagccaagctcgacaaacgagggtaaaaggtcgaaca
aggcctgctaaattagatcaaagtgaaccagaaaaaagtgcatcctctgatgatacatca
aacaaagatgccatagagtcaaaacgaggggcccaaggagttcaaggaagcataaccggt
ttaagccaatctcgaagaacacgggcaaagatgggagccaagcatgccaaattagacgaa
aacgaacttgaactcagtgctgcctcagaaaatgcaccttctaatgaagccactgaatca
gatagggggtttcatgaaattcacgaaacagagacaaaagaagatgataaaaacagcacg
aaagaaaaagcagaagtttttgatgtatctcaagggaacaatatcaatgggatagcgtct
atggaattggatggcagagacgactatcaggacagtgaaaaggtcacgggacatagtgag
atatataactcgaaaggagaagaaaaaatagatgtttcagataagccggaagtaacactt
gatcctcttcaagcgatgttgttaaatatgataccgagccttggagtgaaatctgaagca
tatcaatctgcatctggaagtgaggtaccggtaagaatagatccaagcattggagtgaag
aaaactgaggcatcatcaaaacctgccctcgaagatgaggtaccaccagtaagagtagat
cctgatgcagggcctgttcaaaagaagaagaaagtcagttacaaggatgttgctggcgag
ctgcttaaggattggtaa
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integrated database retrieval system
