Papaver somniferum (opium poppy): 113303278
Help
Entry
113303278 CDS
T05758
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113303278
09122 Translation
03013 Nucleocytoplasmic transport
113303278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113303278
03041 Spliceosome [BR:
psom03041
]
113303278
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
113303278
Spliceosome [BR:
psom03041
]
Complex C
Other components
EJC/TREX
113303278
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113303278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
113303278
NCBI-ProteinID:
XP_026408089
LinkDB
All DBs
Position
8:142741355..142750425
Genome browser
AA seq
627 aa
AA seq
DB search
MAESTSGIRILLHQHQQDRVPTPISCHAERDRVLEIFRSAILKSGPPADFALETVQEAIK
PQRQTVLVQDENQSLENALRTLLQELVSSAVQSGEEIMQFGQSIDDEESTQGQIPRLLDI
VLYLCEKGHVEGGMIFQLLEDLTEMSTMRDCKEVFGYIESKQDILGKQELFGRGKLVMLR
TCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKDAPKGVS
IDFNFYKTFWSLQEHFCNPASSMVAPVKWHKFSANLTVVLDTFDAQPLTDDDGNANNLDE
EDAAAFSIKYLTSSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKNDKDGPSESMKEEI
RSCEERVKKLLEMIPPKGKGFLRNIERILEREKNWVWWKRDGCPPFEKPPTEIKPGQVKK
RRKILMGNKELHQLWMWADKNPNALDDPNRIKTPSIMEYWKPLAEDMDPKAGIEAEYHHK
NNRVYCWKGLRFSARQDLEGFSRFNDFGIEGVVPPDLLPLEMRSKYQSKPAERSKRAKKE
EAKDTTPPQEDSQFTNPAAEMDGGGIGGELEDSGVPMDADAVGASQSGAQTPEDNSKQSP
AELGQEAGQSEAEVEMDGDGETDTEAE
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcaacttcagggattcgaattcttcttcaccaacaccaacaagaccgagtt
cctactcccatatcttgccacgccgagagagaccgagtcctcgaaatattcagaagtgct
atattgaaatctgggccacctgcagattttgcacttgagacagtgcaagaggctataaaa
cctcagaggcaaactgttttagtccaagatgagaatcagtcattggagaacgcccttcga
acattgcttcaagaattggtgtcatcagcagttcagtctggagaagagatcatgcagttt
gggcagtctattgatgacgaggaaagtacccagggccaaataccacgtcttcttgatatt
gtgctctatctttgtgaaaaaggacacgttgaaggtggtatgatattccagttgttggaa
gatttgacagaaatgtctactatgagagactgcaaagaagtcttcggttatatagaaagt
aaacaagatatattggggaagcaagaactttttggacgaggaaagcttgtgatgttgagg
acatgcaatcagcttcttcgccgtctgtcaaaggcaaatgatgtggttttttgtggacga
attcttatgtttttggcacatttcttcccactgtcagaacgttcagctgtcaatataaag
ggagttttcaatacttccaacgaaacaaaatatgaaaaggatgctcctaagggtgtttct
attgatttcaacttctacaagacattctggagtttgcaggagcatttctgcaaccctgcc
tcctcaatggtagctcctgtaaagtggcataaattttcagcaaatttaacggttgtcttg
gatacttttgatgcgcaaccactgactgacgatgatggaaatgcaaacaatcttgatgaa
gaagatgcagcagctttcagcataaagtatctgacaagcagtaaattgatggggttagag
ctgaaagatccaagttttcgtcgccatgttctcgttcagtgccttatactatttgattac
ctgaaggcccctggtaagaatgataaagatgggccttctgaaagcatgaaagaggaaatt
aggtcttgcgaggagcgtgtaaagaagcttcttgaaatgattccacctaaaggaaaggga
tttcttcggaatattgagcgtatattggagcgagagaagaattgggtttggtggaaacgt
gatggttgtccaccatttgaaaagccacctacagagataaaacccggccaagttaaaaaa
cggagaaagatattaatgggaaataaagaactccatcagctgtggatgtgggcagataaa
aatcctaatgctctggatgatcctaatcgtataaaaaccccttctatcatggagtactgg
aaacccttggccgaggatatggatccaaaggctggaatagaagctgaatatcaccataaa
aataaccgggtttattgctggaaaggacttcgattttcagctcgacaagacttggaaggc
ttttctcggtttaatgacttcggcatagaaggagttgtacctccagaccttttaccttta
gaaatgcgttcaaagtatcaaagtaagcccgccgagaggtctaaacgagctaaaaaggaa
gaagctaaagatactacaccaccacaggaggacagtcagttcacaaaccctgcagcagag
atggatggtggtggaattggtggtgaacttgaggactctggtgtaccaatggatgctgat
gctgttggtgcctcccaaagtggtgcacagactcctgaagataattccaagcaaagtcct
gcagaattaggtcaggaagcaggccaatctgaagcagaagttgaaatggatggtgatggg
gagactgatacagaggcggaatag
DBGET
integrated database retrieval system