Papaver somniferum (opium poppy): 113310898
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Entry
113310898 CDS
T05758
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113310898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psom03021
]
113310898
03019 Messenger RNA biogenesis [BR:
psom03019
]
113310898
Transcription machinery [BR:
psom03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113310898
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
113310898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
113310898
NCBI-ProteinID:
XP_026415502
LinkDB
All DBs
Position
9:42361261..42367378
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AA seq
960 aa
AA seq
DB search
MEMESSRRPGLKKPRLVEDLERELSSNGSLIDHRVVRRGGGGGAQPPSTILSRVRENNDT
STRVNNQQLQAQQQHQEIVSEYKSALAELTFNSKPIITNLTIIAGENLHAAKGIAAAICS
NILEVPTEQKLPSLYLLDSIVKNIGRDYIRYFALRLPEVFGKVYRQVDASMHTSMRHLFG
TWKGVFPPACLQQIEKEFGFGSATNVSSSGGPTPRPDSQSQRPANSIHVNPKYLEAARQR
LQQSNRAKVDESTAAVDTTMPVKTTINGRGRPWADPPIKQVNRDPRLALRELEKKTSVGY
EDNEYGSDLSRHAEVEIRKRSERALEQGLGKPWYAAGGNATDTISQRNTVNSNNGSVNLR
TPRSSQVIAQLQPSQKAMNKSILGGMPGNWKNFEEEEYLWDDMKSRQREHDSSSQDTWPP
ENDDKPEFEDSLTQPHSDIRSRINRKTSTDSSSMAYQKQAPFGHHTPSTWALQESHTANG
LNHKVTPEGFSGLSDGPSTYLSGLTGMASSTARAGRQSLTESPVGAANFGGSLMNPASGS
AGVFGQKRHQLLRSASPSEQSEPENKILKLAGQFNQASQDSFLSKSHHHPQNLRGSSPPL
PHQELSNSGNISDIAGQLSRSNLLAAMMKTVSGGIPSLEHQDSHSNIQPPLPSGPPPTLS
APSSASMASKHPKRTLVAPPLPPGPPPPVSVQTTKTTNAAQNPLSSLLNTLVGKGLISAP
AKSSKLSSTQGPGQLPHQSSPISTRSTVPVSGSASLLSHGNIWQPSESKAEKIPTMPQPK
MSEIKDLIGFEFKPELLRESHPSVISDLFEDLPHECSICGLRLKLEGLERHLEWHALKKH
EASSSNSVSRKWFLSSVDWVSGTTTLSSELEKSKDEPEVPADESQCACLLCGELFEDFYS
HKKEIWMYKGAVYMTVPALETEGKSWTIDESSSGGPIVHASCISPSSVYDLGLAKKVEQM
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagtagtcgtagaccaggtttgaaaaaacctagattagttgaagatctt
gaaagagagttatcttctaatggttctttaatcgatcatcgtgttgttcgaagaggaggc
ggcggcggagctcagccaccatcaacgattctatctagggttagagaaaacaacgatact
tcaactagggttaataatcagcagctccaagcgcaacagcaacatcaagaaatagttagt
gaatataaatctgctttagctgaattaacattcaattcgaaaccgataataacgaatttg
acgattatagctggggagaatcttcatgctgctaaagggattgctgcggctatttgttct
aatattctcgaggttcctactgagcagaagttaccatcgctatacctattggatagtatt
gtgaagaatattggcagagattacatcagatacttcgccttgaggcttcccgaggtcttt
ggcaaggtgtacagacaggtcgatgcttcaatgcataccagtatgcgacatctttttggg
acatggaaaggtgtattccctcctgcttgtcttcagcagattgaaaaggagtttggtttt
ggatcagcaaccaatgtttcatcttctggaggcccaacaccaaggcccgattctcagtcc
caacgaccagcaaatagcatccatgtgaatcccaaatatttagaggcggcgaggcagcgg
cttcagcagtcaaacagggcaaaagttgatgagagtactgctgcagtggatacaacaatg
cctgttaaaacgaccatcaatggccgtggaaggccatgggcagatccaccaataaagcag
gttaatagggatcctcgacttgcattacgtgagctcgaaaagaagacaagtgtaggatat
gaagataatgaatatggttctgatctttcaaggcatgcagaggtggaaatcagaaaacgt
agtgaacgggctttagaacaaggacttggaaagccttggtacgcagcaggtggcaatgcc
actgacacaattagccaaaggaatactgtcaacagtaataatggatccgtaaaccttcga
acacccagatcttcacaagtcattgctcagctccaaccttcgcagaaagctatgaataaa
agcatcttaggagggatgccggggaattggaagaattttgaagaagaggagtacctgtgg
gatgacatgaaatccagacagagagagcatgatagctctagtcaagatacttggcctccc
gagaatgacgataagccggagtttgaagatagccttacacaacctcacagtgatattaga
tcgaggattaacagaaaaacttcaactgattcatcgtccatggcataccaaaagcaagct
ccatttggccatcatacaccgtcaacttgggcattgcaagagtcgcacacagcaaatggt
ttgaaccataaggtgacccctgaaggattttcgggactatctgatggaccttccacctac
ctcagtgggttaacaggcatggcttcatctacagccagagcaggacgtcaaagtctaacc
gaatctcccgtaggcgcggctaattttggcgggtctctgatgaacccagcatcaggatct
gctggagtttttggacaaaagcggcatcagcttctgcggtctgcttctccatctgaacag
tcagaacctgaaaataaaatattgaagttagcaggacagtttaaccaggcatctcaagat
tctttcttgtctaaaagtcaccatcatcctcaaaatttaaggggctcatctcctccactg
ccgcatcaagagctgagcaattcaggcaacatttcagatattgcagggcaattgagtaga
agtaatctattggctgcaatgatgaagactgtatccggcggcatccccagtttagaacat
caggactctcattcaaatattcagccacctcttccaagtggacctcctccaaccctttca
gcgccatcctctgcttccatggccagcaaacatcctaagaggacattggtagcacctccc
ttgccacctggccctcctcctcccgtgtcagtacaaacgactaagacaactaatgctgca
cagaatccactttcaagtcttttgaacacattagttgggaaggggttgatctctgcacct
gcaaagtcttcgaagctatcttctacccaggggcccggtcagctcccacaccagagctct
cccatttctacaaggagtacggtgccagtttctggttctgcttctttgttatcacatggt
aatatatggcagccctctgaatcgaaggcagagaagattcctaccatgcctcaaccaaag
atgtcagagataaaggatctcataggctttgagtttaagccggaacttctccgagaatca
catccatcagtgattagtgacctctttgaagaccttcctcatgagtgcagcatatgtggt
ctgcggcttaaacttgaaggacttgaaaggcacttggagtggcatgcactgaaaaagcat
gaagcaagcagttccaatagcgtttcaagaaagtggtttttgagttcagtagattgggtc
tcagggacaacaaccctgtcgtctgaactggagaagtcaaaggacgaacctgaggtccct
gcagatgagagccagtgtgcgtgcttgttgtgtggagagctttttgaagatttttacagt
cataaaaaggagatttggatgtataaaggagctgtttatatgactgtcccggctcttgaa
acagaaggcaaatcatggacaatagatgaaagttctagtgggggtccaattgtgcatgca
agctgtatatcgccaagttcagtttatgacctgggtctagccaagaaagttgagcagatg
tag
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integrated database retrieval system
